Triosephosphate Isomerase Glycosomal

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-125   CYS-126  6.2 6.4 9.2 -0.7 26.6 26.7 113.0
 CYS-126   ILE-127  7.5 7.5 12.9 -18.0 40.7 38.7 -24.4
 ILE-127   GLY-128  7.6 7.5 0.6 2.0 47.0 40.0 263.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-141   VAL-142  9.6 9.9 24.2 -26.7 32.1 39.0 -185.6
 VAL-142   VAL-143  10.0 9.9 -4.3 5.5 144.3 155.7 19.9
 VAL-143   LEU-144  7.1 7.3 3.5 15.4 69.5 67.2 187.7
 LEU-144   THR-145  8.2 8.7 -13.5 4.5 111.2 118.0 1.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-165   TYR-166  4.4 4.2 10.1 -8.2 23.2 34.6 141.6
 TYR-166   GLU-167  4.7 4.8 18.8 -29.8 79.4 73.3 -182.1
 GLU-167   ALA-168  8.5 8.3 13.9 -2.5 4.7 16.1 289.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-184   GLU-185  7.2 6.8 1.7 2.1 115.7 117.6 -23.7
 GLU-185   ALA-186  4.6 4.4 7.9 -7.2 60.5 59.7 5.0
 ALA-186   HIS-187  1.9 1.8 6.6 -6.8 34.6 36.0 99.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees