Liver Alcohol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-169   CYS-170  8.4 8.5 36.9 -45.5 125.5 126.0 146.9
 CYS-170   LEU-171  9.3 9.0 17.1 -28.1 127.0 126.3 -94.2
 LEU-171   ILE-172  5.7 5.7 52.3 -55.9 155.1 146.7 30.9
 ILE-172   GLY-173  6.5 6.6 -6.5 0.5 48.3 41.6 5.7
 GLY-173   CYS-174  8.6 9.0 27.9 -30.7 125.3 116.6 -65.2
 CYS-174   GLY-175  6.6 6.4 -2.8 23.4 100.5 111.4 63.8
 CYS-174   GLY-175  6.6 6.4 -2.8 23.4 100.5 111.4 63.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-174   GLY-175  6.6 6.4 -2.8 23.4 100.5 111.4 63.8
 CYS-174   GLY-175  6.6 6.4 -2.8 23.4 100.5 111.4 63.8
 GLY-175   PHE-176  4.4 4.4 -25.1 14.5 86.1 76.4 -40.1
 PHE-176   SER-177  1.4 1.2 -27.2 -3.6 29.4 21.3 283.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-289   VAL-290  11.3 11.6 -3.2 0.3 87.5 98.0 -11.0
 VAL-290   ILE-291  8.0 8.2 10.7 -18.6 119.1 125.5 100.4
 ILE-291   VAL-292  8.3 8.5 12.1 -10.2 120.2 110.0 33.1
 VAL-292   GLY-293  6.4 6.6 -12.6 114.1 87.9 81.0 -56.7
 GLY-293   VAL-294  9.0 10.0 22.0 4.2 67.1 53.3 291.0
 VAL-294   PRO-295  12.3 12.4 -33.9 -10.8 74.1 94.9 191.0
 PRO-295   PRO-296  15.2 15.8 20.1 4.0 37.6 86.3 263.9
 PRO-296   ASP-297  16.3 19.3 102.8 136.2 64.8 18.9 -1276.2
 ASP-297   SER-298  19.5 19.2 -165.6 14.7 111.8 147.7 1494.4
 SER-298   GLN-299  18.1 20.0 -81.4 -21.3 157.7 89.3 -657.9
 GLN-299   ASN-300  20.0 20.3 -43.6 -34.6 115.1 118.2 -375.4
 ASN-300   LEU-301  19.1 19.7 -10.8 15.0 65.6 70.5 53.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-303   ASN-304  19.7 19.6 0.7 1.1 151.4 154.9 -81.6
 ASN-304   PRO-305  20.6 20.5 2.2 -5.1 102.2 109.7 52.0
 PRO-305   MET-306  17.6 17.6 14.3 -22.5 92.4 92.0 -3.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-316   ALA-317  4.7 5.0 -2.5 0.9 78.9 73.0 -58.2
 ALA-317   ILE-318  2.7 3.1 -23.6 14.1 48.3 46.0 6.8
 ILE-318   PHE-319  5.0 5.1 1.3 3.0 123.6 114.8 -157.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-365   GLU-366  17.0 18.0 12.0 27.0 89.8 87.3 -14.1
 GLU-366   SER-367  14.1 15.1 30.9 -75.2 56.1 53.5 -121.3
 SER-367   ILE-368  11.5 11.9 -23.3 21.4 41.1 47.8 197.6
 ILE-368   ARG-369  8.5 9.6 -1.5 9.4 69.5 76.5 -45.3
 ARG-369   THR-370  7.6 7.7 -28.2 26.3 142.4 146.6 -14.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees