Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-109   ILE-110  6.9 6.7 -5.7 -2.0 88.3 91.6 -2.6
 ILE-110   SER-111  4.7 4.5 0.0 -1.0 133.4 130.3 21.5
 SER-111   ILE-112  5.7 5.6 9.2 -7.3 89.8 86.2 23.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-190   SER-191  1.5 1.5 -3.6 -9.3 167.7 169.5 -116.8
 SER-191   THR-192  3.0 2.6 2.4 8.9 42.1 41.7 79.3
 THR-192   SER-193  3.9 3.9 -1.9 -4.6 104.6 105.3 -18.2
 SER-193   ILE-194  3.1 3.4 6.2 -2.9 61.5 64.3 8.6
 ILE-194   GLU-195  1.5 1.5 -8.8 6.7 166.0 167.3 -34.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ILE-207   GLY-208  10.1 10.3 -1.4 -24.1 48.0 56.1 195.2
 GLY-208   GLY-209  11.7 11.7 23.9 -34.4 84.4 84.1 -61.1
 GLY-209   LEU-210  11.8 10.7 7.9 1.4 127.5 135.8 -71.6
 LEU-210   ILE-211  9.7 9.2 15.7 -35.5 161.9 155.3 105.7
 ILE-211   ASP-212  9.4 9.3 2.0 -4.3 115.9 114.6 2.4
 ASP-212   SER-213  9.0 8.8 11.9 -17.1 59.2 53.4 -24.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees