Putative Enzyme Ydif

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-274   LEU-275  17.7 17.7 -0.5 -2.2 84.7 86.0 52.5
 LEU-275   ASP-276  19.0 19.0 -3.8 20.2 55.5 57.9 -259.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-302   ALA-303  3.4 3.5 3.9 -16.0 159.4 159.4 274.0
 ALA-303   VAL-304  2.6 2.6 2.3 0.2 95.7 99.7 -52.4
 VAL-304   GLY-305  1.4 1.3 -3.2 8.4 29.8 32.1 -172.3
 GLY-305   ASN-306  2.4 2.4 9.2 -10.9 108.4 107.6 5.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-326   ASP-327  5.8 5.9 -11.5 6.4 79.7 76.6 -113.0
 ASP-327   PHE-328  4.4 4.5 2.5 -9.5 145.3 144.6 163.8
 PHE-328   ILE-329  2.8 2.8 3.5 -1.6 95.0 99.6 -47.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-371   ASP-372  3.2 3.0 -2.0 -4.3 91.7 92.5 -29.3
 ASP-372   VAL-373  3.4 3.2 -2.6 10.8 123.0 120.9 172.4
 VAL-373   CYS-374  2.6 2.6 -9.2 7.8 108.0 111.3 -21.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-388   VAL-389  7.9 8.2 -7.8 12.6 127.4 127.6 37.6
 VAL-389   HIS-390  10.1 10.4 1.9 4.4 107.3 111.5 -37.6
 HIS-390   LYS-391  11.2 11.3 6.4 -10.8 137.0 139.6 143.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-409   LYS-410  3.2 3.2 3.0 -4.7 90.9 89.9 69.7
 LYS-410   LYS-411  5.7 5.5 0.3 -4.7 76.2 76.8 -47.4
 LYS-411   ILE-412  5.4 5.3 4.7 -5.6 65.4 65.9 74.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-452   SER-453  1.6 1.8 -9.2 9.4 54.2 54.6 34.7
 SER-453   GLY-454  2.3 2.3 -1.3 4.3 123.2 123.3 49.6
 GLY-454   LYS-455  5.8 5.9 -1.6 3.9 85.2 85.9 58.5
 LYS-455   ILE-456  7.7 7.5 -7.8 5.3 56.1 55.7 37.6
 LYS-455   ILE-456  7.7 7.5 -7.8 5.3 56.1 55.7 37.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LYS-455   ILE-456  7.7 7.5 -7.8 5.3 56.1 55.7 37.6
 LYS-455   ILE-456  7.7 7.5 -7.8 5.3 56.1 55.7 37.6
 ILE-456   ALA-457  6.8 6.6 2.4 -6.7 165.9 165.4 102.8
 ALA-457   LEU-458  6.3 6.2 6.4 -4.8 101.0 103.0 -16.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-460   GLY-461  10.1 10.1 -13.2 6.6 142.5 139.5 -160.9
 GLY-461   LEU-462  11.3 11.2 12.7 -15.3 52.2 45.1 -10.9
 LEU-462   ASP-463  8.2 8.3 -3.3 11.5 89.9 86.9 40.7
 ASP-463   VAL-464  9.0 9.1 9.0 -2.8 103.4 105.6 -19.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-517   ILE-518  25.6 25.6 10.5 -9.7 41.9 47.1 -113.4
 ILE-518   ASP-519  26.8 27.0 12.3 -1.0 64.5 68.0 9.8
 ASP-519   ALA-520  26.8 26.8 -31.0 52.5 172.1 167.6 499.0
 ALA-520   ALA-521  25.1 25.5 35.4 -34.0 89.0 85.4 -228.7
 GLY-523   PHE-524  19.2 19.6 -13.0 24.5 61.6 66.1 -100.2
 PHE-524   VAL-525  16.6 16.8 15.3 -12.3 59.1 51.7 113.1
 VAL-525   LEU-526  14.2 14.5 -0.8 -5.3 45.7 49.9 83.2
 LEU-526   PRO-527  11.1 11.2 -5.0 10.0 96.3 93.3 -117.5
 PRO-527   GLU-528  12.1 11.9 1.3 1.6 67.7 59.0 15.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees