Tick-Borne Encephalitis Virus Glycoprotein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-4   HIS-5  13.1 15.5 161.7 -18.2 31.8 139.2 -113.5
 HIS-5   LEU-6  10.9 16.2 159.7 63.0 85.6 150.6 99.5
 LEU-6   GLU-7  12.7 15.2 -32.0 -17.3 74.5 61.2 46.1
 GLU-7   ASN-8  16.4 18.2 -168.2 27.9 19.0 9.2 229.6
 ASN-8   ARG-9  16.1 19.0 -138.7 73.2 49.7 59.0 -472.3
 ARG-9   ASP-10  15.3 19.3 -154.1 30.4 35.6 94.8 148.2
 ASP-10   PHE-11  16.3 15.9 -152.0 -33.7 64.9 56.1 199.4
 PHE-11   VAL-12  16.7 14.0 23.7 -4.0 167.7 151.5 -36.5
 VAL-12   THR-13  15.6 14.0 7.9 18.4 113.4 107.2 -11.7
 THR-13   GLY-14  16.9 13.4 -4.7 21.4 4.7 5.0 -28.6
 GLY-14   THR-15  16.0 12.0 39.2 20.0 108.7 124.3 -52.9
 THR-15   GLN-16  18.8 13.0 114.7 -23.0 133.8 94.4 -68.8
 GLN-16   GLY-17  18.9 10.3 -111.8 1.3 52.7 151.5 -52.0
 GLY-17   THR-18  15.7 11.1 36.9 -39.4 62.1 43.7 -14.2
 THR-18   THR-19  14.0 8.4 36.5 -13.4 72.7 56.4 44.0
 THR-19   ARG-20  10.5 9.6 152.3 9.8 60.3 64.3 126.8
 ARG-20   VAL-21  8.9 8.9 -31.1 29.4 124.4 142.7 4.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-294   GLU-295  8.0 6.4 160.6 -69.2 55.8 29.2 107.5
 GLU-295   LYS-296  9.1 8.2 -173.9 124.7 75.8 81.4 19.8
 LYS-296   LEU-297  9.4 11.9 70.5 -80.2 149.8 150.1 14.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees