Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-120   MET-121  0.5 2.8 4.8 2.8 109.6 106.7 -3.3
 MET-121   GLU-122  3.7 5.9 -8.9 9.5 127.9 136.3 2.7
 GLU-122   ARG-123  5.5 6.9 -1.3 -3.8 96.3 101.0 -2.6
 ARG-123   LEU-124  5.3 4.5 9.4 -26.0 139.9 131.7 19.2
 LEU-124   THR-125  6.7 6.4 -24.1 38.5 83.1 79.4 -13.2
 THR-125   GLY-126  9.3 9.5 -59.4 67.5 142.0 134.3 26.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-163   ASN-164  9.8 9.5 -24.1 17.8 94.1 95.8 12.1
 ASN-164   GLU-165  11.0 11.3 -8.9 -15.8 91.8 87.1 3.3
 GLU-165   GLU-166  9.4 10.6 7.1 -1.6 36.3 32.5 7.8
 GLU-166   THR-167  8.7 11.1 0.1 6.5 77.7 63.6 0.6
 THR-167   VAL-168  6.7 8.2 -13.2 2.0 46.2 59.6 9.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees