Dna-Directed RNA Polymerase II 140Kd Polypeptide
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-1149
ARG-1150
8.2
8.4
19.0
-6.0
73.8
79.6
-14.8
ARG-1150
LEU-1151
11.6
11.7
-17.7
12.0
152.3
141.8
-20.6
LEU-1151
MET-1152
11.3
11.6
21.3
-63.1
82.7
92.5
-2.8
MET-1152
GLU-1153
10.8
11.2
144.6
36.7
103.4
146.7
-359.2
GLU-1153
ALA-1154
14.3
11.7
161.3
-62.3
128.8
106.4
764.2
ALA-1154
SER-1155
16.4
14.6
162.5
111.4
74.8
22.1
-268.6
SER-1155
ASP-1156
16.6
16.9
77.9
25.1
122.3
64.4
-74.4
ASP-1156
ALA-1157
16.5
15.8
-13.9
-88.6
113.2
63.5
82.5
ALA-1157
PHE-1158
13.8
14.5
24.7
-74.1
78.2
73.9
-37.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees