Lysine, Arginine, Ornithine-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-88   ALA-89  9.1 8.9 -1.4 2.0 125.9 121.4 1.8
 ALA-89   ALA-90  6.1 5.9 0.6 -17.3 104.3 107.4 15.2
 ALA-90   ASP-91  2.4 2.4 52.1 -5.6 71.9 63.9 47.1
 ASP-91   SER-92  3.1 1.8 -10.0 -0.1 54.3 73.7 14.4
 SER-92   ARG-93  5.1 4.4 -23.3 10.2 64.2 60.9 16.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-189   TYR-190  2.4 2.7 -4.2 15.3 126.6 120.3 17.0
 TYR-190   PHE-191  3.4 3.9 -7.3 10.6 140.9 137.0 20.4
 PHE-191   GLY-192  1.0 1.9 -1.6 -7.1 80.8 85.2 24.2
 GLY-192   ASP-193  2.3 2.0 12.8 -14.4 70.2 55.5 1.7
 ASP-193   GLY-194  5.8 5.0 23.6 -6.6 37.3 44.2 12.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees