Threonyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-396   VAL-397  6.0 6.1 -2.2 5.3 137.6 144.6 35.4
 VAL-397   ASN-398  6.3 6.3 0.9 -5.1 38.2 42.9 -27.7
 ASN-398   GLY-399  6.3 6.4 11.3 -5.6 96.0 100.6 25.4
 GLY-399   CYS-400  4.1 4.2 -3.9 -1.5 103.6 109.8 8.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-406   MET-407  5.9 5.8 6.9 -5.3 91.3 90.8 14.7
 MET-407   TYR-408  7.7 7.5 -3.5 7.7 32.7 31.9 -30.0
 TYR-408   SER-409  7.4 7.2 -9.4 -1.0 41.5 43.7 68.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-417   VAL-418  9.3 8.1 12.5 -17.2 156.9 159.8 32.3
 VAL-418   LYS-419  9.4 9.1 13.3 -14.5 94.9 93.9 17.0
 LYS-419   LEU-420  12.8 12.6 -21.4 7.9 27.6 21.2 108.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-464   LYS-465  15.9 15.9 6.4 -13.0 99.7 97.2 38.8
 LYS-465   ILE-466  13.2 13.0 24.6 -27.7 155.7 161.1 19.6
 ILE-466   GLU-467  10.7 10.6 -0.3 -4.4 81.2 80.8 38.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees