D-Lactate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-12   GLU-13  4.1 4.0 -1.7 3.1 35.2 36.9 -59.2
 GLU-13   LYS-14  3.9 3.7 -4.0 4.6 105.0 108.5 80.7
 LYS-14   PRO-15  4.9 4.7 0.6 -6.4 96.1 97.2 22.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-16   LEU-17  3.5 3.6 8.4 -7.2 70.7 69.7 101.5
 LEU-17   LYS-18  6.6 6.5 -4.7 7.8 72.1 73.1 61.3
 LYS-18   GLU-19  8.4 8.3 1.0 -2.0 52.8 56.2 -51.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-99   PRO-100  5.0 5.1 4.2 -2.8 101.8 102.2 62.9
 PRO-100   VAL-101  6.5 6.6 4.2 -0.9 66.0 67.4 18.6
 VAL-101   TYR-102  6.0 6.1 -0.6 10.7 146.7 148.4 170.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-303   HIS-304  6.0 6.1 2.7 -6.5 32.5 30.3 -51.4
 HIS-304   ALA-305  6.8 6.8 4.9 -0.4 50.8 51.5 80.9
 ALA-305   VAL-306  6.2 6.2 1.2 -4.1 102.6 101.1 38.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees