Benzoylformate Decarboxylase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-184   LEU-185  35.0 34.9 -3.3 1.5 144.0 146.6 -36.3
 LEU-185   ASN-186  33.7 33.5 -0.9 0.4 122.1 121.1 -1.1
 ASN-186   ASP-187  35.9 35.6 3.5 -4.2 105.2 105.9 -4.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-374   GLU-375  22.7 22.8 1.3 0.7 109.9 110.2 -83.0
 GLU-375   SER-376  20.6 20.8 4.8 -5.2 40.4 40.8 -53.8
 SER-376   THR-377  18.2 18.2 -2.2 1.2 64.0 63.0 -7.5
 THR-377   SER-378  15.2 15.3 -2.4 4.2 72.2 71.8 5.0
 THR-377   SER-378  15.2 15.3 -2.4 4.2 72.2 71.8 5.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-377   SER-378  15.2 15.3 -2.4 4.2 72.2 71.8 5.0
 THR-377   SER-378  15.2 15.3 -2.4 4.2 72.2 71.8 5.0
 SER-378   THR-379  12.6 12.8 1.8 -1.3 109.8 110.0 -199.4
 THR-379   THR-380  15.5 15.5 1.7 1.8 52.9 51.9 179.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-398   ALA-399  21.8 21.9 -5.0 2.5 39.0 40.7 176.3
 ALA-399   ALA-400  21.2 21.2 2.7 4.3 116.6 115.3 -418.5
 ALA-400   GLY-401  18.7 18.7 -2.9 7.3 137.1 139.7 480.6
 GLY-401   GLY-402  17.3 17.3 -10.3 3.6 106.7 108.7 -267.8
 GLY-402   LEU-403  19.7 19.6 0.4 4.9 30.6 33.3 190.0
 LEU-403   GLY-404  20.6 20.8 0.1 -0.9 91.7 94.7 -147.6
 GLY-404   PHE-405  24.4 24.4 0.8 -0.4 111.5 113.1 -92.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-495   LYS-496  29.8 29.7 -4.2 1.7 91.9 93.2 89.6
 LYS-496   ALA-497  26.1 26.1 -3.7 0.5 77.1 74.0 21.0
 ALA-497   ASP-498  23.7 23.7 1.1 2.6 98.8 96.3 139.7
 ASP-498   ASN-499  20.4 20.4 0.6 -4.2 106.8 102.8 -83.8
 ASN-499   LEU-500  20.1 20.1 -1.5 0.1 109.0 108.1 123.8
 LEU-500   GLU-501  22.2 22.3 2.4 2.9 112.9 116.5 -287.4
 GLU-501   GLN-502  25.0 24.9 -3.8 -4.5 108.9 112.1 46.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-506   LEU-507  30.0 30.0 -3.6 -1.8 35.3 37.7 178.2
 LEU-507   GLN-508  30.7 30.7 5.7 0.7 80.7 77.6 35.6
 GLN-508   GLU-509  33.8 33.8 -2.9 1.4 85.8 84.9 -70.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees