Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-518   MET-519  10.3 10.2 -3.5 17.0 109.1 111.4 12.5
 MET-519   THR-520  6.5 6.5 -9.0 -7.0 40.3 37.3 58.6
 THR-520   LEU-521  3.8 4.2 -5.0 -2.0 113.6 111.9 -31.7
 LEU-521   GLY-522  0.1 1.5 23.8 -31.0 142.0 134.3 34.9
 GLY-522   ILE-523  3.2 3.2 6.6 -9.0 62.2 58.8 -18.7
 ILE-523   SER-524  6.8 6.7 5.2 -7.7 79.4 76.9 28.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-745   SER-746  4.7 5.1 1.0 6.2 118.3 114.4 -15.8
 SER-746   LYS-747  1.2 1.5 7.1 13.1 86.3 94.5 55.1
 LYS-747   GLY-748  2.5 2.2 -29.0 12.2 35.8 50.2 51.7
 GLY-748   TYR-749  5.2 4.9 -11.3 -1.7 66.5 64.8 17.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-783   TRP-784  5.0 5.3 3.9 -9.8 98.2 98.9 13.3
 TRP-784   ARG-785  2.7 3.2 35.4 33.0 43.6 51.2 150.1
 ARG-785   GLY-786  5.3 5.6 -162.1 -34.2 161.8 135.8 -825.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees