Atp-Dependent RNA Helicase Dob1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-130
TYR-131
17.9
17.5
25.9
37.8
20.9
27.2
292.4
TYR-131
THR-132
16.7
15.9
-2.6
-0.2
128.5
136.2
27.0
THR-132
PRO-133
18.4
17.2
-3.6
-18.3
124.3
150.1
-113.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
HIS-265
TYR-266
10.3
11.0
5.6
-7.9
77.1
80.5
-19.0
TYR-266
MET-267
13.1
14.1
32.2
-15.2
16.0
20.7
76.3
MET-267
ARG-268
12.3
12.8
-0.4
3.4
121.3
124.3
-7.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-269
LYS-270
17.4
18.4
2.6
-4.5
147.7
152.2
8.0
LYS-270
GLU-271
19.9
20.6
-18.1
22.2
90.8
83.9
32.9
GLU-271
ARG-272
20.6
22.3
55.3
-63.7
83.5
84.2
-41.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-317
TYR-318
6.9
5.6
-7.7
-4.5
65.4
76.9
15.2
TYR-318
THR-319
8.9
8.1
-24.5
17.9
36.5
41.0
8.9
THR-319
ASN-320
10.8
9.8
17.7
-25.2
105.5
102.9
11.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
MET-589
ILE-590
21.8
21.4
-8.8
-2.1
23.3
21.2
18.3
ILE-590
LEU-591
21.5
22.0
7.2
-13.7
103.5
98.0
0.8
LEU-591
ASN-592
24.5
25.2
25.6
-22.2
66.0
66.9
53.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLU-597
GLY-598
21.7
23.2
149.4
-174.4
98.6
70.4
-65.4
GLY-598
ILE-599
18.2
19.8
7.1
0.9
97.2
84.0
15.4
ILE-599
SER-600
16.5
17.8
66.5
-53.9
61.8
58.5
-15.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
PRO-601
GLU-602
16.1
17.7
48.4
-47.1
108.4
107.2
-38.9
GLU-602
PHE-603
13.2
14.4
-14.3
29.7
117.9
119.8
60.4
PHE-603
MET-604
11.5
12.5
0.7
-1.7
28.2
35.1
4.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLN-878
LEU-879
15.4
14.7
5.4
-0.3
51.8
61.8
46.5
LEU-879
ASP-880
15.6
15.5
-8.6
12.7
109.3
113.3
86.0
ASP-880
ASP-881
19.0
18.4
16.4
-3.7
125.0
125.4
-56.7
ASP-881
LEU-882
20.9
20.6
1.4
-2.4
92.0
84.2
13.6
ASP-881
LEU-882
20.9
20.6
1.4
-2.4
92.0
84.2
13.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-881
LEU-882
20.9
20.6
1.4
-2.4
92.0
84.2
13.6
ASP-881
LEU-882
20.9
20.6
1.4
-2.4
92.0
84.2
13.6
LEU-882
ARG-883
19.3
19.7
20.6
-13.3
147.8
140.6
-71.3
ARG-883
ARG-884
20.2
20.8
8.6
7.6
86.0
85.0
11.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-890
ARG-891
29.0
29.6
-5.6
3.2
103.9
109.6
-7.2
ARG-891
LEU-892
32.1
32.1
-53.6
71.1
43.2
52.1
-32.1
LEU-892
GLY-893
33.4
34.1
86.3
-165.5
107.1
97.8
200.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees