Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-107   LEU-108  7.6 6.1 20.1 -11.0 109.1 114.6 -25.0
 LEU-108   GLY-109  4.6 2.7 -25.7 34.1 139.5 139.3 13.8
 GLY-109   ILE-110  3.3 2.7 -52.4 30.4 64.6 69.2 31.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-209   LEU-210  12.0 11.0 5.4 7.7 106.5 121.1 -16.2
 LEU-210   ILE-211  8.6 7.9 2.3 2.6 159.4 163.0 -6.3
 ILE-211   ASP-212  7.9 8.1 -162.9 147.0 69.2 47.7 -20.9
 ASP-212   SER-213  5.0 5.0 128.0 -102.5 69.8 56.2 50.7
 SER-213   LYS-214  5.5 4.2 -3.5 3.9 77.5 66.7 15.6
 LYS-214   GLY-215  4.3 3.6 20.9 -0.2 38.0 39.4 39.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TRP-250   TRP-251  7.0 7.4 -6.9 -5.7 99.4 90.9 -7.7
 TRP-251   ARG-252  3.7 4.2 -14.0 79.4 33.8 32.5 -136.8
 ARG-252   GLY-253  4.1 5.5 -84.5 11.2 57.3 79.2 99.6
 GLY-253   ASN-254  1.2 4.0 -75.1 -79.9 21.6 56.0 339.6
 ASN-254   GLY-255  1.7 5.8 5.3 137.0 108.6 129.6 -235.7
 GLY-255   CYS-256  5.3 4.7 -166.0 9.6 111.4 86.6 -51.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees