Succinyl-Coa:3-Ketoacid-Coenzyme A Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-279   GLU-280  18.1 18.1 -14.9 14.9 59.4 61.1 -43.5
 GLU-280   ARG-281  16.6 16.9 3.8 -1.6 49.9 53.0 120.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-339   HIS-340  8.2 8.2 2.1 -1.6 62.4 63.8 -6.9
 HIS-340   LEU-341  8.0 8.1 6.1 -6.4 37.4 37.3 -10.6
 LEU-341   GLN-342  5.0 5.1 2.0 2.9 45.6 45.8 80.7
 GLN-342   SER-343  5.8 6.0 0.8 -0.2 60.3 62.6 -18.0
 SER-343   GLU-344  4.4 4.5 5.7 -15.3 25.5 24.0 -94.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-391   GLY-392  14.2 14.4 0.6 6.6 47.0 45.0 73.6
 GLY-392   HIS-393  13.8 14.0 -12.1 9.9 156.7 157.3 -25.8
 HIS-393   VAL-394  13.9 14.0 -6.1 9.8 131.4 136.0 42.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-411   ASN-412  12.9 12.9 1.7 -2.1 130.9 138.1 6.6
 ASN-412   TRP-413  11.0 10.8 -4.7 4.7 107.5 102.7 4.7
 TRP-413   MET-414  9.3 8.9 -5.5 22.5 133.1 125.7 158.3
 MET-414   ILE-415  11.9 11.4 -24.8 38.6 97.3 83.2 -90.7
 ILE-415   PRO-416  15.6 15.0 26.4 -22.9 34.8 24.9 68.6
 PRO-416   GLY-417  15.9 16.6 34.5 84.5 88.7 94.4 191.7
 GLY-417   LYS-418  17.7 18.1 156.4 59.2 148.7 52.5 851.0
 LYS-418   LEU-419  18.5 17.3 23.9 49.3 130.0 118.1 -793.3
 LEU-419   VAL-420  15.3 15.8 51.9 -0.3 56.9 104.0 90.8
 VAL-420   LYS-421  12.6 12.0 97.0 -28.7 110.8 139.4 -549.0
 LYS-421   GLY-422  11.1 10.5 -13.0 -14.9 88.9 93.7 88.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-434   THR-435  16.5 16.7 -21.8 19.0 132.4 135.0 -41.3
 THR-435   LYS-436  13.4 13.6 3.5 2.7 86.2 82.6 37.7
 LYS-436   VAL-437  14.2 14.3 -1.1 -1.5 83.3 80.5 17.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees