Nickel-Binding Periplasmic Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASN-197   VAL-198  13.2 12.6 7.7 -1.1 80.3 83.1 -2.1
 VAL-198   ILE-199  15.1 14.5 5.9 -14.2 155.4 145.1 46.3
 ILE-199   PRO-200  13.9 13.1 -8.4 -5.8 96.5 105.5 4.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-211   GLY-212  4.4 4.2 -20.0 -1.9 51.3 58.2 -1.1
 GLY-212   ASP-213  5.8 5.8 3.6 7.7 122.8 112.9 -7.5
 ASP-213   ILE-214  7.8 8.1 -17.6 -1.1 17.9 3.3 230.4
 ILE-214   ASP-215  5.8 6.6 37.3 -30.5 116.9 102.1 -114.9
 ASP-215   LEU-216  5.2 5.3 12.4 4.0 118.1 124.9 -83.1
 LEU-216   LEU-217  2.4 2.7 -6.5 6.8 92.0 91.4 -69.2
 LEU-217   TYR-218  3.5 3.3 16.2 -21.3 137.0 145.2 74.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 SER-233   GLN-234  10.5 10.3 3.6 1.5 58.2 62.8 19.6
 GLN-234   ASN-235  12.6 12.4 -22.9 44.5 121.8 117.8 112.4
 ASN-235   PRO-236  10.3 9.8 0.6 -5.7 121.6 119.2 37.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 MET-472   MET-473  9.2 9.0 -2.2 -1.5 34.8 41.5 146.1
 MET-473   VAL-474  7.9 7.5 23.9 -12.7 100.3 103.1 -158.6
 VAL-474   VAL-475  4.6 4.2 -0.4 -1.4 19.3 23.8 37.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-484   TYR-485  4.7 3.9 -4.4 4.3 87.9 86.0 25.5
 TYR-485   ALA-486  3.8 3.5 14.8 -17.3 147.7 158.2 -11.5
 ALA-486   PRO-487  2.5 2.8 12.3 5.8 118.8 124.3 18.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees