Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-104   PRO-105  9.3 9.1 -5.8 12.5 55.2 50.0 -94.4
 PRO-105   PHE-106  6.7 6.7 -5.0 -4.4 51.5 53.0 80.5
 PHE-106   MET-107  8.2 8.2 1.5 -4.0 149.0 148.7 18.4
 MET-107   THR-108  5.3 5.4 5.7 -3.9 85.6 83.2 -3.3
 THR-108   LEU-109  3.2 2.8 6.7 -2.7 122.6 118.8 -41.9
 LEU-109   GLY-110  1.4 1.3 -7.0 5.4 102.7 102.5 7.2
 LEU-109   GLY-110  1.4 1.3 -7.0 5.4 102.7 102.5 7.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-109   GLY-110  1.4 1.3 -7.0 5.4 102.7 102.5 7.2
 LEU-109   GLY-110  1.4 1.3 -7.0 5.4 102.7 102.5 7.2
 GLY-110   ILE-111  5.0 5.0 -6.1 4.2 85.1 88.1 40.7
 ILE-111   SER-112  8.1 8.2 -12.3 12.5 24.2 26.1 -18.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-208   GLY-209  12.9 13.0 6.6 -7.1 112.9 111.1 -11.7
 GLY-209   GLY-210  12.4 12.4 2.9 -6.9 106.8 104.2 27.8
 GLY-210   LEU-211  9.9 9.8 -7.4 10.8 15.1 11.1 -55.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees