Serine/threonine-Protein Kinase Pak 4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-453   VAL-454  7.5 6.3 0.2 1.3 67.0 55.9 -8.0
 VAL-454   ILE-455  11.1 9.8 8.4 5.0 14.6 24.6 73.7
 ILE-455   MET-456  10.7 8.9 8.8 22.6 48.5 53.3 133.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-462   ASN-463  3.1 3.1 -0.1 1.5 106.8 105.7 -2.0
 ASN-463   VAL-464  0.7 0.6 0.9 -5.6 22.1 16.3 -9.4
 VAL-464   VAL-465  0.8 0.4 5.7 2.8 56.6 64.6 31.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-479   LEU-480  5.8 5.9 -1.0 -4.6 131.5 133.0 -6.4
 LEU-480   MET-481  8.0 8.1 4.2 -0.8 30.9 25.9 1.6
 MET-481   GLU-482  6.1 6.6 4.7 -12.7 45.7 52.0 5.2
 GLU-482   PHE-483  7.2 8.5 25.0 -13.9 101.9 97.6 -16.5
 PHE-483   LEU-484  9.6 10.2 13.5 9.6 36.0 25.0 99.8
 LEU-484   GLN-485  10.1 10.6 -24.3 39.4 73.7 76.8 -6.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees