Proaerolysin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-201   GLY-202  10.3 9.8 2.9 -12.6 148.1 143.2 117.6
 GLY-202   TRP-203  13.0 12.8 4.7 0.5 85.9 82.5 1.8
 TRP-203   ALA-204  16.4 16.2 -3.8 6.6 45.0 43.9 -23.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-222   THR-223  12.1 11.8 50.8 -47.8 135.1 139.0 97.4
 THR-223   ALA-224  12.3 12.1 -0.6 3.9 85.1 82.5 -57.7
 ALA-224   THR-225  15.0 15.0 -13.1 4.7 16.0 20.8 122.4
 THR-225   ASN-226  17.2 17.4 -1.1 -10.7 86.8 81.3 -70.7
 ASN-226   TRP-227  18.9 19.4 -8.7 1.2 32.7 27.9 48.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-272   THR-273  20.6 21.4 1.1 -15.7 127.6 139.1 189.0
 THR-273   THR-274  20.0 20.0 16.7 -11.1 96.2 91.7 -13.7
 THR-274   THR-275  16.9 16.8 -31.4 23.9 88.1 80.2 183.8
 THR-275   SER-276  16.9 17.1 -34.8 46.7 69.4 75.2 -116.2
 SER-276   LEU-277  15.9 15.7 20.0 -14.9 54.1 47.0 148.4
 LEU-277   SER-278  15.4 15.4 30.6 -17.2 111.5 105.0 -173.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-290   ILE-291  22.8 22.6 3.7 4.0 154.4 155.0 -66.5
 ILE-291   PRO-292  20.7 20.5 -4.9 -1.1 89.3 86.6 53.6
 PRO-292   VAL-293  17.3 17.1 -8.6 5.4 90.3 83.8 -3.8
 VAL-293   LYS-294  14.5 14.6 14.0 -23.1 110.1 105.7 72.4
 LYS-294   ILE-295  11.4 11.4 -3.6 6.1 96.8 88.2 -91.8
 ILE-295   GLU-296  9.0 9.3 -1.9 3.2 60.4 64.8 7.9
 GLU-296   LEU-297  6.6 6.9 8.1 1.9 73.9 74.2 51.9
 LEU-297   TYR-298  5.0 5.7 9.1 -2.1 134.9 141.8 -67.5
 TYR-298   LYS-299  6.0 6.9 1.1 -14.4 77.1 78.0 -38.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-408   GLN-409  13.3 14.1 -1.0 0.5 91.4 89.0 -34.9
 GLN-409   PHE-410  10.0 10.9 9.0 -22.2 103.2 104.2 33.2
 PHE-410   ALA-411  10.2 10.9 -6.9 11.2 95.4 101.9 -8.8
 ALA-411   GLY-412  9.2 9.9 12.3 -10.2 56.1 53.5 -85.8
 GLY-412   ASN-413  11.0 11.5 -1.3 9.1 51.2 56.6 -71.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees