Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-120   VAL-121  2.0 2.5 24.8 -48.5 103.8 108.2 13.2
 VAL-121   GLY-122  2.5 5.0 38.3 28.7 60.8 50.8 47.6
 GLY-122   ARG-123  4.6 4.9 -45.6 6.4 92.8 73.4 -2.0
 ARG-123   ARG-124  6.1 6.2 -4.6 2.3 56.5 58.5 -1.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-154   THR-155  13.0 13.4 -1.6 -23.7 83.7 78.5 -3.7
 THR-155   ARG-156  9.3 9.6 0.4 4.5 32.0 19.0 12.2
 ARG-156   LYS-157  7.8 7.4 8.8 4.5 48.5 78.8 -0.8
 LYS-157   ASP-158  6.4 6.7 -6.6 33.0 88.6 68.5 -7.4
 ASP-158   ASP-159  3.5 3.1 -36.9 -6.0 28.9 19.9 35.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees