Peroxisomal Targeting Signal 1 Receptor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  THR-484   SER-485  15.5 14.7 2.8 9.2 55.6 70.8 38.7  SER-485   ILE-486  13.2 12.9 -11.7 4.3 93.4 96.8 38.5  ILE-486   ASP-487  9.9 9.7 -18.8 8.6 70.4 69.3 60.3  ASP-487   PRO-488  8.4 8.3 2.5 -14.8 47.5 47.2 -88.8  PRO-488   ASP-489  7.8 7.4 25.9 -22.7 68.2 70.2 -7.3  PRO-488   ASP-489  7.8 7.4 25.9 -22.7 68.2 70.2 -7.3 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  PRO-488   ASP-489  7.8 7.4 25.9 -22.7 68.2 70.2 -7.3  PRO-488   ASP-489  7.8 7.4 25.9 -22.7 68.2 70.2 -7.3  ASP-489   VAL-490  7.1 7.0 8.9 5.1 73.8 69.3 -50.0  VAL-490   GLN-491  3.8 3.6 -4.7 -14.3 37.5 31.5 50.4  GLN-491   CYS-492  2.7 2.6 8.4 2.2 70.9 63.9 21.0  GLN-491   CYS-492  2.7 2.6 8.4 2.2 70.9 63.9 21.0 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLN-491   CYS-492  2.7 2.6 8.4 2.2 70.9 63.9 21.0  GLN-491   CYS-492  2.7 2.6 8.4 2.2 70.9 63.9 21.0  CYS-492   GLY-493  4.2 4.6 -6.2 4.5 57.2 58.4 -7.2  GLY-493   LEU-494  4.2 4.5 -10.3 7.8 99.9 102.0 29.8  LEU-494   GLY-495  2.3 2.5 -8.7 -7.1 155.4 152.3 -85.3  GLY-495   VAL-496  3.1 3.3 12.0 -0.5 91.9 87.9 36.2  VAL-496   LEU-497  6.6 6.7 -1.2 -11.4 69.5 68.1 41.2  LEU-497   PHE-498  7.2 7.5 13.1 -9.3 44.0 51.8 -8.6  PHE-498   ASN-499  7.5 7.5 7.5 -6.9 48.3 40.0 0.8  ASN-499   LEU-500  9.0 8.8 -4.4 -1.8 63.2 69.6 0.4  LEU-500   SER-501  11.6 11.7 1.1 11.5 81.7 91.0 32.7  SER-501   GLY-502  12.6 12.6 -8.8 5.0 162.2 153.1 -4.9  GLY-502   GLU-503  12.4 12.6 -4.5 0.1 108.8 102.6 -33.0 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees