Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-109   ILE-110  5.4 5.3 -33.8 27.3 95.8 97.9 -3.6
 ILE-110   SER-111  4.8 4.5 -2.5 -8.3 62.1 66.9 66.0
 GLY-109   ILE-110  2.9 3.0 -33.8 27.3 59.6 62.3 34.3
 ILE-110   SER-111  3.5 3.6 -2.5 -8.3 48.5 49.1 61.3
 SER-111   ILE-112  5.6 5.7 8.4 -7.6 118.1 119.0 3.3
 GLY-109   ILE-110  1.1 0.7 -33.8 27.3 22.8 18.9 97.2
 ILE-110   SER-111  2.9 2.9 -2.5 -8.3 53.0 57.5 72.6
 SER-111   ILE-112  1.9 2.2 8.4 -7.6 158.8 158.8 -23.4
 GLY-109   ILE-110  5.4 5.3 -33.8 27.3 95.8 97.9 -3.6
 ILE-110   SER-111  4.8 4.5 -2.5 -8.3 62.1 66.9 66.0
 GLY-109   ILE-110  2.9 3.0 -33.8 27.3 59.6 62.3 34.3
 ILE-110   SER-111  3.5 3.6 -2.5 -8.3 48.5 49.1 61.3
 SER-111   ILE-112  5.6 5.7 8.4 -7.6 118.1 119.0 3.3
 GLY-109   ILE-110  1.1 0.7 -33.8 27.3 22.8 18.9 97.2
 ILE-110   SER-111  2.9 2.9 -2.5 -8.3 53.0 57.5 72.6
 SER-111   ILE-112  1.9 2.2 8.4 -7.6 158.8 158.8 -23.4
 ILE-112   LEU-113  2.4 2.4 2.6 1.7 122.9 122.9 9.7
 GLY-109   ILE-110  5.4 5.3 -33.8 27.3 95.8 97.9 -3.6
 ILE-110   SER-111  4.8 4.5 -2.5 -8.3 62.1 66.9 66.0
 GLY-109   ILE-110  2.9 3.0 -33.8 27.3 59.6 62.3 34.3
 ILE-110   SER-111  3.5 3.6 -2.5 -8.3 48.5 49.1 61.3
 SER-111   ILE-112  5.6 5.7 8.4 -7.6 118.1 119.0 3.3
 GLY-109   ILE-110  1.1 0.7 -33.8 27.3 22.8 18.9 97.2
 ILE-110   SER-111  2.9 2.9 -2.5 -8.3 53.0 57.5 72.6
 SER-111   ILE-112  1.9 2.2 8.4 -7.6 158.8 158.8 -23.4
 ILE-112   LEU-113  2.4 2.4 2.6 1.7 122.9 122.9 9.7
 LEU-113   TYR-114  0.4 0.4 13.1 -0.8 157.6 153.2 -80.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-185   ALA-186  5.7 5.5 -3.3 4.1 136.2 140.8 43.4
 ALA-186   LEU-187  4.4 4.4 -2.4 3.3 137.7 134.0 0.4
 LEU-187   LEU-188  4.9 4.8 -2.6 4.5 155.3 159.7 44.0
 LEU-188   MET-189  5.1 5.2 -11.7 5.7 60.7 62.3 86.8
 LEU-188   MET-189  5.1 5.2 -11.7 5.7 60.7 62.3 86.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-188   MET-189  5.1 5.2 -11.7 5.7 60.7 62.3 86.8
 LEU-188   MET-189  5.1 5.2 -11.7 5.7 60.7 62.3 86.8
 MET-189   GLU-190  4.8 4.7 12.3 -5.2 143.1 137.8 -53.9
 GLU-190   SER-191  4.4 4.2 3.4 -4.0 74.6 72.8 -1.6
 SER-191   THR-192  2.5 2.9 -1.0 7.1 92.9 90.5 48.9
 THR-192   SER-193  6.2 6.6 4.0 -10.5 35.6 30.9 -80.7
 THR-192   SER-193  6.2 6.6 4.0 -10.5 35.6 30.9 -80.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-192   SER-193  6.2 6.6 4.0 -10.5 35.6 30.9 -80.7
 THR-192   SER-193  6.2 6.6 4.0 -10.5 35.6 30.9 -80.7
 SER-193   ILE-194  7.5 7.5 12.2 -11.0 34.1 38.3 39.5
 ILE-194   GLU-195  5.0 5.2 -5.0 10.0 94.5 91.7 41.7
 GLU-195   TYR-196  7.4 8.0 -9.0 7.2 70.8 64.4 -9.5
 GLU-195   TYR-196  7.4 8.0 -9.0 7.2 70.8 64.4 -9.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-195   TYR-196  7.4 8.0 -9.0 7.2 70.8 64.4 -9.5
 GLU-195   TYR-196  7.4 8.0 -9.0 7.2 70.8 64.4 -9.5
 TYR-196   VAL-197  10.3 10.5 -4.4 2.6 5.6 3.4 46.9
 VAL-197   THR-198  9.1 9.2 -9.4 -7.8 58.2 60.8 82.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-204   THR-205  5.5 5.6 1.2 -10.7 133.6 138.0 70.3
 THR-205   GLN-206  5.8 5.9 -0.8 14.3 43.0 47.5 -131.9
 GLN-206   ILE-207  4.6 4.7 18.5 -0.7 94.2 82.0 -2.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees