Serine/threonine-Protein Kinase Pak 4

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-310   VAL-311  5.3 6.3 -22.7 13.2 152.3 147.2 -59.2
 VAL-311   VAL-312  3.5 4.2 73.0 -61.4 34.4 29.8 67.3
 VAL-312   ASP-313  5.5 6.3 -23.8 3.8 93.4 99.1 5.6
 ASP-313   PRO-314  8.8 9.6 15.5 -29.3 119.4 108.1 25.3
 PRO-314   GLY-315  11.8 12.7 31.6 -30.9 49.2 40.5 -11.4
 GLY-315   ASP-316  14.7 15.8 49.2 -48.4 65.8 56.6 -41.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-363   PHE-364  8.4 9.4 27.7 11.9 83.4 76.4 6.3
 PHE-364   ASN-365  5.4 6.4 13.3 -9.9 129.2 131.1 -34.1
 ASN-365   GLU-366  7.0 7.0 8.4 -14.5 161.4 152.6 17.5
 GLU-366   VAL-367  6.3 5.5 8.7 1.8 100.8 77.8 6.7
 VAL-367   VAL-368  2.6 2.3 -13.9 -6.9 93.5 105.6 -8.3
 VAL-368   ILE-369  3.4 2.4 -19.4 11.1 43.0 54.6 -1.3
 ILE-369   MET-370  6.0 5.7 6.4 -29.5 148.0 158.3 89.9
 MET-370   ARG-371  3.7 4.7 23.6 -5.3 83.2 100.2 -5.3
 ARG-371   ASP-372  3.6 3.1 22.7 -11.5 94.7 92.2 -50.6
 ASP-372   TYR-373  7.2 6.8 89.7 -59.4 141.2 136.4 -79.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-378   VAL-379  6.9 6.0 -13.6 3.6 95.0 94.7 10.5
 VAL-379   GLU-380  4.0 2.9 -16.3 18.0 52.2 40.5 17.9
 GLU-380   MET-381  1.1 1.2 -3.3 2.0 57.6 54.5 -9.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-395   GLU-396  4.6 5.0 -16.3 -10.2 14.9 7.6 86.2
 GLU-396   PHE-397  3.9 3.3 -33.0 -7.1 68.8 59.6 69.4
 PHE-397   LEU-398  6.4 5.7 14.7 -28.3 139.4 156.9 34.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees