DNA Double-Strand Break Repair Protein Mre11

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PRO-223   GLY-224  2.9 2.8 -4.4 0.5 9.5 9.7 32.7
 GLY-224   SER-225  3.5 3.5 -4.4 2.5 67.4 68.6 80.1
 SER-225   LEU-226  2.1 2.1 6.8 -9.5 103.5 105.1 -1.8
 LEU-226   GLU-227  2.0 1.9 -7.6 1.2 11.9 12.1 84.5
 GLU-227   ARG-228  1.3 1.4 -7.7 10.1 77.8 78.1 -33.1
 ARG-228   TRP-229  2.0 2.0 5.2 -7.4 103.7 101.4 -10.0
 TRP-229   ASP-230  5.1 5.1 8.2 -13.2 148.3 143.2 46.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-255   TYR-256  4.2 4.2 7.7 -5.6 135.8 137.6 67.9
 TYR-256   ILE-257  5.4 5.5 13.4 -9.0 127.6 126.4 -59.7
 ILE-257   VAL-258  7.8 7.8 5.9 -4.3 141.4 142.4 -22.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLU-267   ILE-268  9.1 9.3 6.0 -9.1 119.1 119.6 -47.1
 ILE-268   LYS-269  8.5 8.5 -11.4 4.8 15.6 23.6 110.5
 LYS-269   VAL-270  9.2 9.1 21.0 -24.1 118.5 120.2 -107.4
 VAL-270   ARG-271  6.2 6.0 -18.8 9.6 19.7 21.0 98.5
 ARG-271   PRO-272  5.1 4.6 -11.1 16.9 85.4 84.0 -9.7
 PRO-272   PHE-273  5.6 5.3 9.4 -19.1 117.2 111.5 19.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees