Sugar Abc Transporter, Sugar-Binding Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ARG-104   VAL-105  15.7 16.0 -3.5 9.4 96.2 95.9 -4.4
 VAL-105   LYS-106  12.5 12.8 2.6 -87.6 96.1 92.0 49.6
 LYS-106   ASN-107  12.3 12.5 31.2 114.4 33.0 73.5 359.0
 ASN-107   GLY-108  14.6 11.6 -97.2 -44.7 129.9 173.6 -464.3
 GLY-108   TYR-109  13.2 12.5 56.8 -7.8 82.7 68.6 79.2
 TYR-109   ALA-110  9.6 9.0 18.4 -0.9 45.8 49.3 48.3
 ALA-110   GLU-111  9.7 10.1 -13.1 -10.6 155.5 145.9 -90.7
 GLU-111   LYS-112  11.0 11.0 14.3 -7.8 69.1 77.4 21.8
 LYS-112   TYR-113  8.1 8.2 -2.5 -9.4 126.2 131.2 -20.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 PHE-124   THR-125  8.2 8.3 -1.9 1.0 59.5 57.3 10.6
 THR-125   ALA-126  4.8 4.8 -2.1 7.1 132.9 130.8 8.2
 ALA-126   ASN-127  1.3 1.3 -25.0 0.0 59.4 62.2 82.4
 ASN-127   ALA-128  2.8 3.0 9.0 -17.5 89.0 85.5 -13.4
 ALA-128   TYR-129  5.3 5.6 -7.7 4.0 87.2 83.8 9.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-289   GLY-290  7.9 8.1 4.0 -14.6 77.1 77.8 -15.3
 GLY-290   ALA-291  4.4 4.6 -3.5 -6.1 54.1 63.0 56.1
 ALA-291   GLY-292  1.0 1.0 6.7 3.6 62.8 60.5 36.1
 GLY-292   ASP-293  2.8 2.8 -3.0 3.9 94.7 101.1 29.2
 ASP-293   LEU-294  5.2 5.0 9.3 -11.8 87.1 85.7 16.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLN-339   ALA-340  5.3 5.3 -5.3 -28.5 39.8 33.0 86.9
 ALA-340   GLY-341  2.5 2.5 -0.2 27.8 75.5 80.1 -0.7
 GLY-341   GLU-342  4.3 4.5 0.7 -16.7 75.8 59.8 31.1
 GLU-342   ASP-343  7.0 6.6 23.5 0.4 106.0 117.6 -23.7
 ASP-343   SER-344  6.1 5.7 13.9 5.9 57.3 64.3 26.3
 SER-344   PRO-345  4.3 4.1 -0.3 6.0 132.8 114.4 35.2
 PRO-345   LEU-346  7.0 7.0 -12.7 5.9 150.9 151.2 -30.9
 LEU-346   ALA-347  5.7 5.8 -2.9 11.9 86.6 90.2 -17.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees