Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-126   ARG-127  3.1 2.8 1.8 -4.9 86.9 79.3 -9.9
 ARG-127   ARG-128  1.7 2.0 1.9 -5.3 43.2 42.7 2.8
 ARG-128   ILE-129  5.1 5.4 1.4 -8.1 91.5 94.9 6.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-147   GLY-148  14.0 13.9 -4.6 18.1 26.7 13.4 -67.4
 GLY-148   VAL-149  12.6 12.6 -7.8 -5.6 83.2 75.2 15.9
 VAL-149   CYS-150  14.8 14.6 16.8 -1.1 53.2 58.2 39.9
 CYS-150   ASP-151  14.4 14.7 8.8 9.6 49.1 50.5 59.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees