Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-108   GLY-109  3.0 3.0 10.8 -14.5 134.8 130.1 69.7
 GLY-109   ILE-110  6.5 6.5 2.3 7.0 58.9 57.0 136.1
 ILE-110   SER-111  9.9 9.9 -1.6 3.0 104.8 106.0 -80.8
 SER-111   ILE-112  12.1 12.0 -3.1 3.8 128.9 128.5 50.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-167   ALA-168  27.0 28.0 20.8 -46.2 71.2 88.8 -120.1
 ALA-168   LEU-169  24.5 24.7 31.3 -5.3 86.2 77.7 86.3
 LEU-169   VAL-170  22.4 22.6 17.2 -19.2 150.6 145.0 51.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-172   SER-173  17.1 16.7 -6.0 -1.6 105.9 96.6 -14.9
 SER-173   ASP-174  14.0 13.7 6.2 -6.4 18.9 25.4 84.0
 ASP-174   GLU-175  14.6 14.5 -3.4 4.2 93.4 93.2 -94.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-210   ILE-211  10.8 10.5 1.2 -9.9 29.7 34.6 -169.5
 ILE-211   ASP-212  11.8 12.0 2.1 5.4 45.3 44.5 200.2
 ASP-212   SER-213  8.4 8.8 8.5 1.9 113.6 109.7 -142.0
 SER-213   LYS-214  4.8 5.0 13.0 1.5 77.8 84.3 206.5
 LYS-214   GLY-215  2.9 3.5 -24.6 30.0 42.3 49.7 -150.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees