Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-111   ILE-112  1.9 1.9 -2.0 9.9 93.2 97.8 35.7
 ILE-112   LEU-113  2.0 1.9 -5.0 8.0 155.2 155.4 15.6
 LEU-113   TYR-114  3.9 3.8 -6.5 2.9 77.2 78.0 33.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-121   SER-122  9.6 9.6 7.9 5.0 76.0 68.9 20.5
 SER-122   ALA-123  6.2 6.4 -6.0 7.7 114.7 108.4 69.2
 ALA-123   ASP-124  3.3 3.5 -2.7 -3.7 152.3 146.7 -23.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-193   ILE-194  4.9 5.2 8.0 1.1 86.3 90.3 45.7
 ILE-194   GLU-195  1.3 1.5 0.1 -1.2 42.4 40.7 6.3
 GLU-195   TYR-196  3.2 3.1 -2.3 7.8 153.2 152.5 19.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-205   GLN-206  6.5 6.3 -6.1 16.9 142.0 140.4 57.6
 GLN-206   ILE-207  4.6 4.4 -3.2 6.2 136.9 137.4 -18.6
 ILE-207   GLY-208  6.1 5.8 -6.8 1.9 128.1 131.1 0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees