Acetate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-88   GLY-89  8.4 8.3 -4.4 -7.1 51.7 47.8 40.7
 GLY-89   HIS-90  4.9 4.9 -2.3 -7.1 74.6 78.8 51.7
 HIS-90   ARG-91  5.2 4.9 2.3 -12.4 112.1 124.0 41.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-99   THR-100  2.4 4.8 -19.4 44.6 57.1 68.1 -45.6
 THR-100   THR-101  4.8 8.1 -42.2 9.0 38.5 14.5 112.5
 THR-101   SER-102  5.6 7.6 2.3 0.7 113.1 100.5 20.2
 SER-102   ALA-103  4.5 5.2 2.6 26.4 65.0 66.6 52.0
 ALA-103   LEU-104  6.2 6.6 -5.7 -10.2 64.3 57.4 22.1
 LEU-104   TYR-105  8.9 9.2 -31.7 26.9 130.1 124.6 -21.8
 TYR-105   ASP-106  9.2 9.4 0.4 -6.8 54.4 72.2 2.2
 ASP-106   GLU-107  11.4 12.3 28.3 -26.2 40.2 36.5 -14.5
 GLU-107   GLY-108  12.0 13.0 -7.2 7.7 119.0 123.2 -11.6
 GLY-108   VAL-109  8.8 10.4 -14.8 10.7 61.2 68.6 -8.4
 VAL-109   GLU-110  6.5 7.5 18.0 -20.4 84.6 85.1 -12.9
 GLU-110   LYS-111  9.0 8.5 9.1 6.3 31.1 25.6 49.7
 LYS-111   ALA-112  8.4 8.0 -14.3 8.8 92.1 94.9 -11.8
 ALA-112   ILE-113  4.9 4.1 13.5 -11.5 121.6 120.0 2.3
 ILE-113   LYS-114  6.6 5.1 9.3 -13.6 60.5 60.1 2.0
 LYS-114   ASP-115  9.7 8.1 -3.2 9.0 144.0 149.3 5.3
 ASP-115   CYS-116  7.9 5.9 -17.3 15.4 75.0 86.2 -13.0
 CYS-116   PHE-117  7.8 5.2 57.8 -67.3 114.4 104.1 -1.6
 PHE-117   GLU-118  11.4 9.0 -17.9 -14.1 109.5 131.6 -86.2
 GLU-118   LEU-119  12.8 10.0 7.4 0.9 105.6 76.4 -0.3
 LEU-119   ALA-120  11.2 7.2 28.1 -13.0 161.9 132.0 -44.8
 ALA-120   PRO-121  12.1 9.5 80.5 -41.4 101.6 102.6 -43.3
 PRO-121   LEU-122  15.1 13.2 79.9 -0.6 157.8 168.1 -283.7
 LEU-122   HIS-123  16.1 12.8 167.7 27.9 127.0 99.7 445.5
 HIS-123   ASN-124  12.7 15.4 23.3 -65.5 76.4 122.1 40.9
 ASN-124   PRO-125  10.6 13.7 125.9 0.9 93.7 80.5 267.0
 PRO-125   PRO-126  13.8 11.2 -156.2 22.1 19.4 39.6 -774.4
 PRO-126   ASN-127  14.2 9.2 150.4 -18.6 109.1 108.0 488.1
 ASN-127   MET-128  10.5 11.9 115.4 3.2 72.2 105.3 101.2
 MET-128   MET-129  11.5 11.4 34.6 2.4 121.1 124.2 -69.3
 MET-129   GLY-130  14.8 14.6 14.7 -9.4 149.1 149.5 -17.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-145   VAL-146  3.7 3.8 -18.3 22.9 93.7 89.6 35.7
 VAL-146   PHE-147  0.4 1.0 6.9 -6.7 116.0 123.2 16.1
 PHE-147   ASP-148  2.7 2.4 -10.2 -8.8 108.3 107.6 -14.1
 ASP-148   THR-149  6.5 6.0 16.5 -22.8 123.2 130.6 46.9
 THR-149   ALA-150  7.3 7.3 8.4 -7.8 84.0 95.1 -9.1
 ALA-150   PHE-151  7.4 7.0 0.3 12.2 72.8 69.7 9.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-382   ASN-383  11.3 11.3 -21.3 27.4 73.3 73.2 -14.2
 ASN-383   GLU-384  7.6 7.7 21.6 6.7 34.7 36.5 94.3
 GLU-384   GLU-385  6.2 6.3 -11.6 -4.1 79.8 86.1 16.4
 GLU-385   LEU-386  3.4 3.4 2.3 -7.9 108.7 104.5 11.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees