Cap5o

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-201   MET-202  8.5 8.9 -3.2 5.1 117.0 118.2 -12.7
 MET-202   SER-203  5.8 5.9 7.2 -9.6 118.0 115.8 1.7
 SER-203   LYS-204  3.3 3.5 8.8 0.3 85.6 80.9 2.4
 LYS-204   LEU-205  4.9 6.1 -0.8 8.1 150.4 157.2 20.7
 LEU-205   MET-206  4.5 5.5 -12.9 2.1 99.0 97.3 -16.5
 MET-206   GLU-207  1.0 2.1 -3.1 0.1 65.2 68.8 41.9
 GLU-207   ASN-208  3.8 4.9 3.8 4.0 50.8 46.2 59.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-254   GLY-255  15.2 15.9 16.6 20.1 99.9 97.3 -9.2
 GLY-255   GLY-256  16.7 17.0 -115.5 -79.5 133.4 103.8 652.9
 GLY-256   HIS-257  16.2 15.3 -34.2 -89.7 74.1 150.0 -659.9
 HIS-257   CYS-258  16.0 12.6 -158.2 2.6 87.8 69.1 263.3
 CYS-258   LEU-259  12.3 10.4 -167.5 -68.4 55.8 94.3 -224.4
 LEU-259   ALA-260  11.2 6.7 -165.7 29.3 12.1 97.1 581.4
 ALA-260   VAL-261  11.5 4.1 77.2 -57.3 99.6 147.4 -164.5
 VAL-261   ASP-262  11.3 5.4 -154.6 -34.4 98.5 90.1 183.8
 ASP-262   PRO-263  8.1 8.8 176.8 8.1 122.8 145.4 -1424.2
 PRO-263   TYR-264  5.3 10.8 -2.2 25.7 36.1 32.4 -104.6
 TYR-264   PHE-265  6.7 11.6 -12.5 12.7 104.2 46.0 17.2
 ASN-273   ALA-274  5.9 4.9 -92.3 -19.0 116.3 141.5 -540.8
 ALA-274   LYS-275  2.5 1.7 -2.3 5.9 55.6 66.4 3.4
 LYS-275   LEU-276  4.0 3.2 -4.3 0.7 121.8 122.6 -17.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees