Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-88   LEU-89  2.3 2.2 7.7 -3.3 45.2 45.4 44.8
 LEU-89   THR-90  2.4 2.1 3.9 -0.1 65.9 67.3 43.3
 THR-90   ILE-91  2.5 2.5 0.4 -8.3 7.0 6.4 -70.3
 ILE-91   THR-92  2.9 3.1 -7.6 10.0 104.2 106.4 -29.7
 THR-92   TYR-93  5.8 5.9 -9.3 2.0 171.9 175.8 -76.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-103   PRO-104  8.2 8.6 -1.0 -3.5 13.2 17.7 128.3
 PRO-104   PHE-105  7.4 7.6 3.7 -10.9 126.6 131.4 -43.0
 PHE-105   MET-106  8.7 8.9 12.0 -16.2 146.5 146.6 54.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-215   TYR-216  5.8 6.1 -1.8 -4.3 87.7 82.7 83.6
 TYR-216   GLY-217  3.0 3.1 8.5 -11.9 129.9 129.3 5.7
 GLY-217   VAL-218  4.2 4.3 1.5 -3.1 95.0 97.4 -7.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees