3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-139   THR-140  8.8 8.8 -13.7 9.8 118.4 111.6 -38.4
 THR-140   LEU-141  6.3 6.5 -2.6 -3.4 48.2 43.8 42.5
 LEU-141   LEU-142  3.5 3.7 6.1 -6.5 128.4 127.0 -13.1
 LEU-142   ALA-143  6.8 7.0 9.5 -6.0 139.2 133.6 -41.6
 ALA-143   MET-144  8.0 8.3 3.1 3.4 134.1 136.2 -27.3
 MET-144   VAL-145  5.0 5.3 -9.9 2.9 50.0 39.5 63.1
 VAL-145   ASP-146  4.2 4.7 -13.2 25.5 67.0 67.5 -59.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-183   PRO-184  4.9 4.2 -4.4 14.2 138.1 135.4 81.3
 PRO-184   VAL-185  3.9 3.3 -16.9 13.5 71.3 70.6 0.6
 VAL-185   ARG-186  2.1 2.0 -12.5 7.5 67.8 67.1 24.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-211   GLU-212  15.6 15.8 -0.5 4.1 66.4 67.8 -15.7
 GLU-212   ASN-213  16.3 16.5 -30.5 23.4 57.9 55.1 49.5
 ASN-213   ALA-214  13.0 13.4 -4.1 6.9 32.7 37.5 -44.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-216   ILE-217  12.7 13.0 -14.9 9.9 91.3 94.3 12.4
 ILE-217   LEU-218  9.0 9.3 1.5 -1.7 27.0 29.5 -8.0
 LEU-218   LYS-219  8.6 8.8 1.2 2.1 40.3 38.4 23.1
 LYS-219   ALA-220  10.1 10.5 -5.0 5.5 91.6 87.6 -6.3
 LYS-219   ALA-220  10.1 10.5 -5.0 5.5 91.6 87.6 -6.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-219   ALA-220  10.1 10.5 -5.0 5.5 91.6 87.6 -6.3
 LYS-219   ALA-220  10.1 10.5 -5.0 5.5 91.6 87.6 -6.3
 ALA-220   VAL-221  8.5 8.9 -19.6 24.4 72.3 69.4 14.0
 VAL-221   ARG-222  5.0 5.3 5.4 -12.1 170.0 172.8 49.2
 ARG-222   ARG-223  5.6 6.1 -2.9 -11.8 53.3 57.1 121.8
 ARG-223   GLU-224  7.5 8.6 16.6 -2.6 118.9 114.3 -30.0
 GLU-224   VAL-225  6.5 8.8 -17.2 45.8 101.3 118.6 166.1
 VAL-225   THR-226  8.2 10.5 -39.0 27.5 60.1 59.8 77.7
 THR-226   PRO-227  10.1 13.8 -18.2 -5.7 136.0 116.2 -121.8
 PRO-227   GLY-228  11.1 15.0 -5.3 4.2 123.0 125.7 28.4
 GLY-228   GLU-229  13.2 17.2 20.1 -18.9 64.0 48.3 96.0
 GLU-229   HIS-230  12.5 15.4 -2.8 6.2 128.5 120.7 -28.3
 HIS-230   ARG-231  10.8 12.9 -59.7 112.4 80.8 80.4 -50.9
 ARG-231   PHE-232  9.3 9.6 111.6 -158.8 12.4 55.8 -335.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-235   GLU-236  11.7 12.6 12.0 15.4 129.9 124.2 -167.3
 GLU-236   GLU-237  10.0 11.2 -12.2 -6.4 18.2 26.7 202.5
 GLU-237   ILE-238  11.2 11.6 -0.4 0.7 85.9 91.0 -14.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-247   ARG-248  3.1 3.1 9.9 -2.5 7.8 5.1 74.9
 ARG-248   HIS-249  2.5 2.2 1.2 -3.6 72.0 63.7 -11.2
 HIS-249   LYS-250  6.3 5.9 1.8 4.6 89.3 91.5 18.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-253   VAL-254  10.4 9.8 20.6 -14.6 101.4 102.1 -42.0
 VAL-254   SER-255  11.3 10.5 1.6 -4.4 160.0 162.8 29.6
 SER-255   ALA-256  10.0 9.0 23.5 -16.0 130.0 130.7 -84.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees