Gluconate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-35   PHE-36  4.0 3.8 -3.1 0.3 59.6 62.4 12.1
 PHE-36   LEU-37  0.4 0.4 -1.7 0.3 57.7 62.5 11.8
 LEU-37   ASP-38  2.1 2.2 0.9 -6.9 116.1 117.0 46.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-70   ASP-71  4.4 4.0 4.1 -3.2 117.8 117.7 3.6
 ASP-71   ALA-72  7.8 7.3 -3.2 2.6 8.5 7.8 11.7
 ALA-72   ALA-73  6.4 5.9 5.1 -4.0 112.1 109.6 16.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees