Response Regulator Protein Vrar

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-126   GLU-127  8.8 8.5 -35.4 13.6 23.8 35.6 23.5
 GLU-127   PRO-128  9.1 8.9 3.7 -1.6 105.4 86.5 8.4
 PRO-128   GLU-129  6.0 5.8 -11.9 12.1 104.1 128.6 -0.1
 GLU-129   VAL-130  6.7 8.2 -12.4 58.1 154.4 162.4 46.7
 VAL-130   LEU-131  5.6 7.2 -47.7 -6.6 105.8 103.5 -4.0
 LEU-131   VAL-132  3.4 3.4 9.4 7.0 63.3 84.7 8.6
 VAL-132   LYS-133  0.4 5.4 -5.9 -0.8 155.7 158.5 -10.0
 LYS-133   MET-134  2.8 7.1 7.0 6.4 45.2 42.6 18.7
 MET-134   ARG-135  3.0 3.9 -7.0 3.3 105.4 93.4 -6.9
 ARG-135   ASN-136  2.7 4.4 -12.5 -0.2 128.1 116.0 -6.9
 ASN-136   ARG-137  2.1 7.9 15.8 -2.9 20.1 9.6 14.3
 ARG-137   MET-138  0.6 7.1 5.8 4.3 64.0 57.9 2.6
 MET-138   LYS-139  3.3 6.0 2.1 5.3 74.4 78.0 -11.6
 LYS-139   LYS-140  4.7 9.7 19.5 -65.5 32.1 32.6 -43.4
 LYS-140   ARG-141  3.5 10.8 113.9 -76.9 38.9 44.4 37.6
 ARG-141   ALA-142  2.5 8.2 -166.1 -39.5 110.5 134.2 -179.5
 ALA-142   GLU-143  6.3 8.5 -175.0 -9.2 119.6 102.7 22.5
 GLU-143   LEU-144  6.9 6.6 165.6 3.6 19.3 24.5 185.2
 LEU-144   TYR-145  4.8 4.3 11.2 -2.4 44.0 39.4 8.6
 TYR-145   GLU-146  7.4 7.1 -1.1 -1.4 103.0 103.1 -4.9

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Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees