Lethal Factor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-299   ILE-300  7.4 6.9 -3.4 -5.4 80.6 76.0 5.8
 ILE-300   GLU-301  3.9 3.4 3.2 11.1 43.5 42.4 47.8
 GLU-301   PRO-302  2.5 1.9 4.5 -4.7 80.0 79.6 13.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-383   GLN-384  2.1 2.0 6.9 -15.3 75.2 75.7 -24.0
 GLN-384   PRO-385  2.3 2.5 -11.0 35.5 166.0 153.1 92.6
 PRO-385   TYR-386  3.7 3.9 -12.1 1.5 88.8 87.9 -2.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees