Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-138   ARG-139  0.9 2.0 12.9 -16.0 127.5 125.8 11.9
 ARG-139   ILE-140  3.1 1.5 18.6 -35.8 159.9 149.1 25.0
 ILE-140   THR-141  1.3 2.0 -5.2 12.6 83.1 91.6 -9.3
 THR-141   GLY-142  3.7 5.6 17.8 -4.3 81.9 75.5 0.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-175   ARG-176  11.4 10.5 -7.1 42.9 130.3 145.9 49.6
 ARG-176   SER-177  8.1 8.2 118.8 5.1 122.2 99.9 -90.6
 SER-177   ASP-178  8.7 9.1 -71.6 25.6 114.9 63.8 -37.7
 ASP-178   ASP-179  8.5 6.1 -130.6 2.2 65.6 9.5 228.7
 ASP-179   ASN-180  8.1 5.7 -147.1 97.7 125.7 53.6 24.5
 ASN-180   LYS-181  8.1 9.1 81.4 14.2 122.5 126.5 -102.1
 LYS-181   LYS-182  7.9 9.2 -22.0 9.1 97.6 106.4 -1.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees