3-Deoxy-D-Manno-2-Octulosonic Acid Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-182   ILE-183  3.6 3.6 -3.9 -7.4 139.5 139.2 -389.8
 ILE-183   HIS-184  4.6 4.6 -3.9 4.9 103.8 105.7 -138.3
 HIS-184   THR-185  8.0 8.0 -0.5 4.0 178.0 178.5 323.7
 THR-185   GLY-186  9.2 9.0 3.7 -2.1 62.0 61.7 -137.8
 GLY-186   GLU-187  10.9 10.5 -8.9 14.3 86.6 86.6 -104.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-190   ILE-191  8.3 8.5 -0.9 1.7 68.8 71.3 243.9
 ILE-191   LEU-192  5.9 6.0 -1.2 -1.6 137.6 138.3 28.9
 LEU-192   LYS-193  3.9 4.0 2.5 -2.8 46.9 47.4 7.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-205   LYS-206  13.1 13.3 5.4 -3.9 99.7 95.8 207.2
 LYS-206   LEU-207  10.5 10.6 6.5 -8.4 52.5 52.4 -19.9
 LEU-207   ILE-208  7.0 7.0 -6.5 6.8 113.7 115.4 24.7
 ILE-208   LEU-209  6.0 6.2 6.2 -12.2 100.5 100.5 122.9
 ILE-208   LEU-209  6.0 6.2 6.2 -12.2 100.5 100.5 122.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-208   LEU-209  6.0 6.2 6.2 -12.2 100.5 100.5 122.9
 ILE-208   LEU-209  6.0 6.2 6.2 -12.2 100.5 100.5 122.9
 LEU-209   VAL-210  2.7 3.0 -3.3 2.9 52.1 56.3 -215.0
 VAL-210   PRO-211  3.2 3.4 4.7 -4.6 92.1 91.8 127.8
 PRO-211   ARG-212  5.1 5.1 5.3 -7.9 158.3 157.9 259.1
 ARG-212   HIS-213  6.7 6.7 -4.0 0.1 82.6 80.0 -255.9
 HIS-213   ILE-214  9.6 9.8 12.9 -43.0 52.5 49.3 -1550.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-224   ARG-225  2.6 2.7 -1.9 0.5 27.4 26.0 22.7
 ARG-225   ASP-226  4.7 4.9 -4.1 1.5 43.4 42.1 167.6
 ASP-226   PHE-227  3.2 3.2 -5.5 13.0 85.3 86.2 -134.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-306   PHE-307  14.7 14.7 2.5 -1.5 47.8 44.7 -48.4
 PHE-307   GLU-308  16.0 16.0 -2.0 0.2 120.0 118.0 -40.1
 GLU-308   VAL-309  16.2 16.2 -6.1 5.0 165.1 166.0 120.3
 VAL-309   LYS-310  16.0 15.9 1.2 -19.4 67.8 67.8 -640.9
 LYS-310   ASN-311  17.3 17.1 1.5 16.2 39.6 27.7 885.4
 ASN-311   GLU-312  15.3 15.7 -9.9 1.0 107.1 104.5 -304.4
 GLU-312   THR-313  12.9 13.1 10.2 -8.6 81.6 84.5 137.5
 THR-313   GLU-314  15.9 16.1 3.5 -1.9 146.7 149.4 -227.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-318   LEU-319  16.7 16.8 -2.8 4.5 94.9 92.5 -266.4
 LEU-319   THR-320  14.4 14.5 -5.6 -1.1 72.1 71.7 74.4
 THR-320   GLU-321  17.5 17.4 3.1 -0.3 46.9 49.1 -136.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees