Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-108   GLY-109  7.1 6.8 -4.4 5.2 122.2 119.0 -39.8
 GLY-109   ILE-110  5.4 5.4 -40.7 28.6 68.3 68.0 63.3
 ILE-110   SER-111  4.7 4.4 1.3 -10.9 151.9 145.8 89.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-190   SER-191  0.5 0.3 18.3 -13.7 26.4 21.3 32.0
 SER-191   THR-192  2.2 2.1 8.7 5.7 61.1 67.1 114.1
 THR-192   SER-193  3.9 4.2 -2.4 -6.1 116.3 114.9 -60.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-195   TYR-196  2.5 2.8 -7.1 12.6 65.8 69.3 -25.8
 TYR-196   VAL-197  5.4 5.7 3.8 -7.5 126.8 127.3 21.8
 VAL-197   THR-198  5.1 5.1 -6.2 -8.8 30.9 32.0 127.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-207   GLY-208  8.4 8.8 -8.5 -14.9 35.0 43.5 169.3
 GLY-208   GLY-209  10.6 11.0 21.0 -22.4 110.1 113.2 -30.6
 GLY-209   LEU-210  11.0 10.5 3.4 9.0 135.0 139.9 -51.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees