Gdp-D-Mannose-4,6-Dehydratase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASN-223
PHE-224
6.6
6.9
-18.1
26.3
157.0
157.6
64.8
PHE-224
VAL-225
6.7
7.1
8.3
-12.8
83.9
85.2
2.9
VAL-225
THR-226
9.0
9.2
13.0
-6.4
79.1
78.6
15.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-240
GLN-241
14.6
14.6
3.9
-16.2
96.1
99.0
27.4
GLN-241
THR-242
14.6
14.9
-1.3
-23.3
77.1
68.4
108.0
THR-242
LYS-243
17.6
18.2
41.1
-16.1
144.3
127.3
-190.2
LYS-243
LEU-244
17.4
17.8
-16.7
1.9
59.9
62.3
68.0
LEU-244
PHE-245
15.3
15.7
-4.0
-31.7
73.3
74.8
102.0
ALA-251
SER-252
17.0
16.6
3.0
-0.9
96.9
123.5
-55.5
SER-252
ARG-253
14.3
14.3
-32.2
8.6
78.4
82.6
-63.6
ARG-253
ASP-254
10.7
10.7
-5.2
-0.2
56.0
53.8
42.1
ASP-254
TRP-255
7.6
7.7
9.9
-11.2
50.8
47.7
-5.4
TRP-255
GLY-256
5.1
5.2
-3.7
-0.9
64.2
68.3
17.1
GLY-256
PHE-257
1.9
2.0
3.9
-0.4
40.9
40.0
16.1
PHE-257
ALA-258
2.9
2.8
0.4
-0.2
85.2
85.8
5.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-280
THR-281
3.9
3.8
4.0
-3.4
63.4
64.3
0.5
THR-281
GLU-282
3.2
3.2
2.5
1.1
45.3
44.0
19.1
GLU-282
GLU-283
6.3
6.2
2.7
-7.4
97.5
99.9
22.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-304
TYR-305
23.8
24.0
-15.3
20.8
127.1
131.3
-2.6
TYR-305
VAL-306
20.4
20.6
-3.7
-22.9
74.6
82.8
15.3
VAL-306
GLU-307
19.7
19.7
-2.4
2.2
125.2
106.1
-66.4
GLU-307
ILE-308
20.3
21.1
57.0
-44.1
113.8
108.3
-61.2
ILE-308
ASP-309
21.2
21.3
-15.3
1.2
129.4
135.9
-99.2
ASP-319
ASN-320
16.9
18.4
63.2
-12.3
148.4
124.4
-482.5
ASN-320
LEU-321
16.3
15.8
38.9
-13.2
124.0
115.5
-156.9
LEU-321
GLN-322
13.3
12.7
15.7
-29.4
128.6
121.2
96.6
GLN-322
GLY-323
11.7
10.5
19.5
1.3
121.9
130.1
-108.2
GLY-323
ASP-324
9.4
8.5
8.2
-8.9
147.2
158.7
34.6
ASP-324
ALA-325
8.1
7.8
-1.3
-2.1
95.6
91.1
-2.4
ALA-325
SER-326
5.5
5.3
1.3
-1.8
148.1
150.5
1.3
SER-326
LYS-327
5.1
5.0
8.7
-6.8
95.4
97.1
-10.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLY-333
TRP-334
8.1
8.3
-2.7
-7.5
30.4
32.4
89.6
TRP-334
LYS-335
6.6
6.6
2.6
-0.1
86.3
85.2
-11.5
LYS-335
PRO-336
4.6
4.1
11.6
-7.4
154.2
155.0
-42.3
PRO-336
GLN-337
4.4
3.7
18.3
1.7
85.4
86.3
26.9
GLN-337
VAL-338
8.1
7.3
-54.2
48.8
40.2
55.7
-8.6
VAL-338
GLY-339
7.8
7.2
3.6
1.3
84.2
79.4
-20.9
GLY-339
PHE-340
8.1
7.8
0.7
-0.6
149.8
146.4
7.2
PHE-340
GLU-341
8.6
8.7
-5.2
-2.9
53.1
51.2
49.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees