Poly(a) RNA Polymerase Protein Cid1
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-51
TYR-52
3.7
3.7
5.7
-5.9
19.1
18.9
1.2
TYR-52
ASN-53
4.8
4.7
7.4
-2.9
84.3
85.1
47.7
ASN-53
GLU-54
6.4
6.5
-1.5
-0.3
77.1
76.1
9.0
GLU-54
ILE-55
4.2
4.4
1.8
-4.1
44.1
45.7
-51.8
ILE-55
LYS-56
1.9
2.1
-0.8
5.4
159.2
158.9
73.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-85
VAL-86
10.1
10.1
0.5
-2.3
58.4
58.7
-68.9
VAL-86
ALA-87
6.7
6.7
0.6
-1.6
29.5
27.3
-31.5
ALA-87
PHE-88
5.9
5.9
-5.0
2.2
95.2
93.2
5.6
PHE-88
GLY-89
2.8
2.9
3.0
-6.9
22.5
22.7
-53.6
GLY-89
SER-90
2.8
2.9
-2.6
8.2
133.9
134.3
129.6
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-91
GLU-92
3.8
3.5
-0.2
1.4
48.9
48.8
-26.6
GLU-92
SER-93
3.5
3.3
12.5
-21.4
78.0
78.1
-71.3
SER-93
GLY-94
3.4
3.4
22.4
-20.5
32.9
21.6
5.7
GLY-94
LEU-95
4.4
4.1
20.6
-13.6
39.6
45.8
68.6
LEU-95
ALA-96
2.5
2.1
-20.7
11.3
109.3
114.5
-56.5
ALA-96
LEU-97
1.5
1.5
10.7
-5.9
11.7
13.1
49.0
LEU-97
LYS-98
2.4
2.8
4.9
8.3
85.1
88.1
-30.8
LYS-98
ASN-99
5.8
6.0
-2.5
1.5
80.7
75.5
11.5
ASN-99
SER-100
8.9
9.2
4.0
-1.2
133.5
136.8
-32.1
SER-100
ASP-101
7.4
7.9
11.8
-20.6
137.7
135.5
111.4
ASP-101
MET-102
9.5
9.9
-9.2
11.3
35.5
33.4
-13.4
MET-102
ASP-103
9.1
9.1
-1.0
12.6
42.7
46.8
-153.3
ASP-103
LEU-104
8.0
8.0
-14.6
12.7
34.7
30.8
60.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-167
ALA-168
6.9
7.0
4.4
-6.6
19.3
18.2
-29.0
ALA-168
ILE-169
5.9
5.8
6.2
-1.4
84.2
85.9
51.8
ILE-169
HIS-170
2.1
2.1
0.3
0.8
89.7
89.4
-5.7
HIS-170
ASN-171
4.7
4.9
1.8
-3.2
32.2
29.5
13.5
ASN-171
THR-172
6.5
6.5
3.0
-0.4
49.1
50.0
39.8
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees