Hiv-1 Reverse Transcriptase
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LEU-234
HIS-235
19.0
19.4
4.4
-7.2
27.3
27.6
-2.6
HIS-235
PRO-236
19.6
20.2
24.5
-17.8
42.3
45.2
63.9
PRO-236
ASP-237
17.9
18.1
105.4
-88.5
24.1
32.1
197.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ILE-309
LEU-310
7.7
8.2
28.0
-23.8
17.1
13.8
50.7
LEU-310
LYS-311
8.5
8.6
70.0
-100.0
72.9
68.4
-46.2
LYS-311
GLU-312
11.2
10.1
26.7
16.4
67.3
101.1
17.1
GLU-312
PRO-313
9.1
8.4
29.5
-14.8
64.3
59.0
83.8
PRO-313
VAL-314
6.5
7.3
-20.3
5.8
49.7
71.6
139.4
VAL-314
HIS-315
3.5
3.8
33.0
14.8
98.7
129.2
-265.4
HIS-315
GLY-316
5.8
3.9
-108.4
6.8
111.4
94.6
-408.7
GLY-316
VAL-317
7.8
7.7
-0.1
54.8
161.7
152.3
691.9
VAL-317
TYR-318
7.5
7.8
13.3
11.2
63.1
69.4
95.8
TYR-318
TYR-319
10.8
11.3
-12.4
-24.3
147.4
159.9
-378.6
TYR-319
ASP-320
12.1
12.4
-11.9
20.3
79.6
92.4
46.4
ASP-320
PRO-321
14.2
15.0
7.3
-22.9
28.8
12.0
-169.2
PRO-321
SER-322
16.6
16.7
25.9
-25.7
75.2
64.8
-1.5
SER-322
LYS-323
17.6
18.5
10.6
-15.4
71.1
76.1
50.4
LYS-323
ASP-324
14.2
15.5
-10.4
29.0
149.7
135.7
220.6
ASP-324
LEU-325
12.1
13.2
42.0
-45.3
102.5
106.1
8.9
LEU-325
ILE-326
9.0
9.6
7.3
-5.9
56.2
60.6
27.3
ILE-326
ALA-327
6.1
6.6
7.7
-13.2
88.3
95.0
-12.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-419
PRO-420
14.2
12.8
-24.2
-5.5
107.2
99.1
-55.3
PRO-420
PRO-421
14.1
14.5
27.8
30.2
32.3
33.2
578.7
PRO-421
LEU-422
11.7
14.3
-30.2
25.8
129.6
152.9
13.7
LEU-422
VAL-423
14.1
13.6
-29.6
-64.8
125.4
140.0
-729.2
VAL-423
LYS-424
11.4
13.8
80.5
48.5
126.8
112.5
-792.4
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees