Glycyl-Trna Synthetase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-142   LYS-143  13.6 14.1 -62.6 8.0 52.8 106.5 -38.8
 LYS-143   PHE-144  13.2 13.1 -15.1 50.5 108.6 121.0 20.1
 PHE-144   ALA-145  10.0 9.7 41.6 -45.9 17.4 9.7 -36.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-225   LEU-226  10.2 10.2 -14.4 16.5 71.0 68.2 8.1
 LEU-226   MET-227  6.5 6.5 -4.4 2.6 112.6 108.7 32.9
 MET-227   PHE-228  6.0 5.8 -3.7 4.1 50.8 52.9 5.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-242   ARG-243  6.3 6.0 5.5 -7.6 118.3 120.0 2.5
 ARG-243   PRO-244  3.6 3.3 -2.3 0.6 121.9 120.0 -5.7
 PRO-244   GLU-245  1.2 1.1 17.1 -20.8 118.8 122.5 25.4
 GLU-245   THR-246  1.7 1.8 5.2 -2.1 129.7 132.5 24.8
 THR-246   ALA-247  3.4 3.0 -12.2 31.6 16.0 24.2 -117.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-278   GLU-279  2.8 2.7 -1.9 7.0 121.1 113.3 44.6
 GLU-279   ILE-280  4.0 4.5 -17.8 23.1 149.8 148.7 18.0
 ILE-280   SER-281  5.9 6.9 -3.8 4.1 146.4 148.9 1.0
 SER-281   PRO-282  5.6 6.9 3.4 10.6 102.5 100.5 -21.7
 PRO-282   ARG-283  6.0 6.6 -4.4 -4.2 140.1 143.8 -45.1
 ARG-283   SER-284  8.4 9.3 -16.9 22.2 74.3 70.5 -15.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-288   VAL-289  8.4 8.6 -14.1 14.4 104.4 103.7 26.5
 VAL-289   ARG-290  5.8 6.2 -1.1 -1.6 61.4 60.7 7.6
 ARG-290   GLU-291  2.5 2.7 30.9 -29.5 135.6 133.0 -26.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-292   THR-293  7.5 7.9 19.0 -5.1 24.7 19.6 117.5
 THR-293   MET-294  9.8 9.9 -3.4 -4.0 127.0 122.7 -108.0
 MET-294   ALA-295  9.3 9.3 -7.6 13.4 152.2 160.5 79.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees