Atp-Dependent RNA Helicase Dob1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-90   ARG-91  24.7 24.4 -10.4 13.6 72.6 63.7 -32.3
 ARG-91   GLU-92  24.9 24.8 8.0 -0.5 168.9 166.8 -53.5
 GLU-92   VAL-93  25.0 24.7 3.6 3.0 100.1 104.9 -89.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-114   LEU-115  23.2 22.6 -1.8 -10.6 59.0 57.8 85.8
 LEU-115   SER-116  20.6 20.0 -27.2 28.8 30.1 22.2 -9.8
 SER-116   HIS-117  20.7 20.5 9.3 -1.7 128.5 131.0 -85.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-323   THR-324  18.3 18.6 -1.0 -16.2 14.3 10.9 240.6
 THR-324   PRO-325  17.6 17.3 2.5 1.8 111.0 106.2 -63.2
 PRO-325   LEU-326  15.4 15.1 -4.2 3.7 63.1 64.0 51.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-521   ARG-522  8.4 8.6 -14.3 13.0 34.6 36.0 41.6
 ARG-522   LYS-523  11.0 11.3 18.1 -30.5 123.3 123.2 34.4
 LYS-523   TRP-524  12.4 12.9 -0.5 -22.1 65.9 56.1 179.8
 TRP-524   ASP-525  15.8 16.1 -9.0 -11.3 15.7 21.4 273.1
 ASP-525   GLY-526  15.3 15.1 39.1 -46.5 127.0 127.7 -6.3
 GLY-526   GLN-527  18.9 18.7 15.6 15.0 67.4 94.1 64.6
 GLN-527   GLN-528  21.0 18.9 -41.5 17.9 147.9 147.1 -305.1
 GLN-528   PHE-529  18.8 17.5 -9.5 -5.4 109.2 138.0 -119.6
 PHE-529   ARG-530  15.9 16.4 -24.0 -11.4 81.5 104.3 -91.4
 ARG-530   TRP-531  12.9 13.1 21.0 -8.9 65.0 63.0 57.9
 TRP-531   VAL-532  9.5 9.7 4.6 -1.0 127.3 130.1 -88.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-538   GLN-539  5.3 4.4 -12.0 7.4 72.5 76.6 97.9
 GLN-539   MET-540  7.8 7.0 2.6 20.3 45.3 39.8 261.7
 MET-540   SER-541  9.2 7.7 3.4 -12.0 44.3 48.5 -76.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ARG-543   ALA-544  13.7 13.4 -12.4 -2.1 24.4 31.6 113.9
 ALA-544   GLY-545  13.9 13.8 -18.3 21.0 95.8 92.8 -12.0
 GLY-545   ARG-546  16.7 16.5 -43.3 50.8 129.7 128.7 21.7
 ARG-546   ARG-547  20.2 20.1 -14.1 18.4 93.4 94.9 201.0
 ARG-547   GLY-548  22.2 21.3 177.6 -172.2 121.3 124.9 -127.6
 GLY-548   LEU-549  25.1 24.7 34.1 -33.8 150.5 166.1 -29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-576   ASP-577  2.9 3.5 -10.9 -6.3 42.2 42.1 197.1
 ASP-577   ARG-578  0.3 1.2 -4.3 9.7 30.2 26.8 -98.3
 ARG-578   LEU-579  1.6 2.5 4.0 -2.4 126.5 122.0 0.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-582   PHE-583  6.3 6.3 20.7 -12.6 23.3 31.0 144.3
 PHE-583   HIS-584  6.4 6.9 3.1 -4.5 72.4 73.4 -22.4
 HIS-584   LEU-585  9.5 10.2 0.9 -12.9 37.6 43.5 -82.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-600   PRO-601  6.2 7.5 25.7 0.2 26.2 25.4 329.3
 PRO-601   GLU-602  7.0 8.2 -0.8 -7.8 103.3 103.6 -86.8
 GLU-602   PHE-603  4.4 5.3 -0.2 10.1 111.5 107.4 87.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-673   LEU-674  46.6 46.9 -9.9 -1.4 64.0 59.4 66.4
 LEU-674   GLN-675  43.3 43.6 4.7 -0.6 148.1 140.5 -18.6
 GLN-675   PRO-676  44.6 45.1 -3.5 5.5 53.2 49.1 -72.0
 PRO-676   GLY-677  42.1 42.7 -7.4 6.7 67.3 61.3 74.8
 GLY-677   ARG-678  41.3 41.9 0.5 -5.1 46.0 50.5 -34.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-681   ILE-682  36.5 36.8 -6.4 11.7 124.9 125.7 20.0
 ILE-682   SER-683  33.1 33.4 8.6 -8.8 61.5 61.1 -11.5
 SER-683   VAL-684  31.1 31.2 -2.0 3.4 125.4 129.8 33.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-690   GLY-691  29.6 30.0 4.4 -11.0 60.9 60.2 9.8
 GLY-691   TRP-692  33.2 33.5 3.4 6.9 82.9 80.5 36.9
 TRP-692   GLY-693  35.9 36.1 -12.7 16.5 132.7 126.1 65.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-721   VAL-722  33.5 33.8 -5.6 -3.2 45.7 41.0 63.1
 VAL-722   VAL-723  32.3 32.7 -16.4 10.0 107.8 100.2 -17.9
 VAL-723   ASN-724  30.7 30.8 -9.4 -1.5 38.2 36.6 123.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-736   PRO-737  25.6 25.8 7.7 1.9 90.1 99.3 -131.4
 PRO-737   PHE-738  29.2 29.6 172.1 -175.4 148.8 162.7 140.0
 PHE-738   ASN-739  30.4 31.3 -12.5 -1.5 42.0 44.0 163.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-740   THR-741  27.3 27.7 -5.8 -9.4 110.1 101.5 -38.0
 THR-741   LEU-742  23.7 24.0 -7.1 -4.3 36.0 35.2 153.4
 LEU-742   PRO-743  22.2 22.3 3.0 3.3 82.6 78.1 35.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-757   ALA-758  27.6 27.7 6.2 -5.2 105.0 115.8 -27.1
 ALA-758   VAL-759  26.9 27.4 -18.8 17.5 52.7 52.4 27.8
 VAL-759   ILE-760  28.9 29.6 -2.4 -0.5 33.7 32.0 42.0
 ILE-760   PRO-761  28.1 28.7 -11.4 16.2 53.9 45.4 -173.7
 PRO-761   ILE-762  29.7 30.1 -12.4 2.6 31.4 38.8 164.6
 PRO-761   ILE-762  29.7 30.1 -12.4 2.6 31.4 38.8 164.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-761   ILE-762  29.7 30.1 -12.4 2.6 31.4 38.8 164.6
 PRO-761   ILE-762  29.7 30.1 -12.4 2.6 31.4 38.8 164.6
 ILE-762   THR-763  30.8 31.2 17.8 -20.2 127.4 131.1 -46.9
 THR-763   LEU-764  32.7 33.2 11.6 -11.6 94.0 90.8 25.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-771   ASN-772  44.0 44.3 -3.1 -5.4 73.0 72.8 17.3
 ASN-772   LEU-773  47.4 47.8 48.5 -43.6 167.3 169.9 -49.7
 LEU-773   ARG-774  46.0 46.5 -2.0 16.5 81.6 81.6 -57.5
 ARG-774   LEU-775  44.2 45.2 -19.2 -8.1 7.6 11.7 470.8
 LEU-775   TYR-776  42.4 43.2 4.3 21.1 117.2 106.3 -410.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-780   ILE-781  36.2 37.8 -38.3 104.6 94.7 122.2 575.2
 ILE-781   ARG-782  33.9 35.5 -110.0 -48.5 83.2 80.0 535.4
 ARG-782   ALA-783  31.3 31.9 106.5 -71.9 165.9 140.1 -516.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-807   LEU-808  46.0 46.4 -23.9 20.0 85.5 74.3 -14.6
 LEU-808   ASP-809  48.2 48.5 -4.1 -1.2 24.7 27.0 75.5
 ASP-809   PRO-810  50.7 50.8 -0.3 13.2 57.3 52.9 -43.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-878   LEU-879  9.8 10.5 1.3 -11.7 12.2 19.4 -135.4
 LEU-879   ASP-880  10.0 11.1 -3.3 7.5 99.7 94.9 -50.4
 ASP-880   ASP-881  13.8 14.9 1.4 -6.6 104.4 105.0 8.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees