Protein (Lar)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 VAL-1493   PRO-1494  16.4 16.9 -2.9 2.2 58.4 56.8 36.2
 PRO-1494   GLU-1495  13.4 13.9 -5.8 -11.5 33.9 37.9 144.8
 GLU-1495   TYR-1496  14.2 15.2 29.5 -17.3 144.3 150.4 -110.6
 TYR-1496   PRO-1497  12.3 12.9 -6.0 4.7 106.8 106.3 -7.7
 PRO-1497   THR-1498  11.9 12.0 1.8 -6.5 104.8 100.4 -20.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 THR-1583   CYS-1584  14.2 13.3 19.4 -9.4 101.6 94.2 -109.9
 CYS-1584   GLY-1585  10.6 10.3 -173.8 176.0 83.4 79.8 67.7
 GLY-1585   HIS-1586  12.1 10.8 16.8 2.8 53.5 48.2 100.0
 HIS-1586   THR-1587  10.8 10.2 13.5 -33.9 126.5 116.9 70.5
 THR-1587   GLU-1588  7.7 7.1 -0.6 -2.2 110.0 125.9 -63.7
 GLU-1588   VAL-1589  8.4 8.3 -9.6 -5.3 63.0 67.1 47.6
 VAL-1589   PRO-1590  10.8 10.8 -2.7 2.1 122.0 125.0 -43.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ALA-1591   ARG-1592  13.9 14.6 10.1 -10.5 136.3 142.2 1.3
 ARG-1592   ASN-1593  17.2 17.5 -9.5 3.1 29.3 30.8 58.2
 ASN-1593   LEU-1594  15.2 15.2 -0.7 -6.2 66.5 71.3 44.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees