Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-105   MET-106  11.8 11.2 5.3 -23.5 121.0 124.0 17.5
 MET-106   THR-107  8.4 7.9 4.4 20.1 40.9 47.7 49.7
 THR-107   LEU-108  7.2 5.7 27.8 -7.4 111.9 115.5 -47.8
 LEU-108   GLY-109  4.4 2.4 -24.5 28.7 136.6 136.4 11.6
 GLY-109   ILE-110  3.6 3.1 -49.0 28.0 61.3 68.2 32.2
 ILE-110   SER-111  5.8 5.5 -4.1 -7.8 58.5 65.7 37.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-208   GLY-209  13.8 14.0 27.1 -34.2 100.3 89.6 -16.2
 GLY-209   LEU-210  12.3 11.5 -4.2 18.0 74.7 58.4 -22.0
 LEU-210   ILE-211  8.9 8.3 6.6 -6.8 156.2 159.1 4.1
 ILE-211   ASP-212  8.3 8.7 -151.3 145.2 68.5 47.9 -43.4
 ASP-212   SER-213  5.5 5.5 126.4 -102.0 72.6 58.1 44.6
 SER-213   LYS-214  5.3 4.4 -15.6 17.1 77.1 68.9 24.6
 LYS-214   GLY-215  3.6 3.0 22.7 -5.6 40.6 42.6 39.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TRP-251   ARG-252  4.0 4.2 14.6 -3.8 147.4 146.2 -23.2
 ARG-252   GLY-253  4.7 5.5 7.8 -89.9 125.6 129.5 159.4
 GLY-253   ASN-254  2.0 3.0 -20.5 39.7 24.8 61.7 -54.0
 ASN-254   GLY-255  2.6 4.0 -62.1 -44.2 71.1 122.7 -40.6
 GLY-255   CYS-256  5.9 5.7 55.3 12.5 71.3 113.0 -7.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees