Glutamate Receptor, Ionotropic Kainate 1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 GLY-110   ILE-111  0.6 0.6 -11.0 -7.4 28.9 30.7 217.2
 GLY-110   ILE-111  0.6 0.6 -11.0 -7.4 28.9 30.7 217.2
 ILE-111   SER-112  3.0 3.0 1.3 0.5 126.1 125.8 46.8
 SER-112   ILE-113  2.3 2.6 12.5 -0.3 147.2 146.7 -89.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 TYR-190   LEU-191  6.8 6.8 -2.1 0.7 29.4 26.0 25.7
 LEU-191   LEU-192  6.3 6.6 -8.3 10.5 68.3 68.7 -13.2
 LEU-192   GLU-193  5.2 5.3 -3.1 -15.1 57.1 52.9 106.5
 GLU-193   SER-194  4.1 4.0 7.1 8.5 60.4 60.2 20.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 ASP-207   THR-208  2.9 2.9 -4.8 6.8 142.3 141.4 32.0
 THR-208   MET-209  1.6 1.6 1.6 -1.5 51.6 53.3 -92.3
 MET-209   LYS-210  3.4 3.3 8.6 -4.4 28.6 31.0 151.4
 LYS-210   VAL-211  3.6 3.2 -3.9 7.4 94.0 96.6 -67.3
 VAL-211   GLY-212  6.5 6.1 3.9 -8.3 23.0 25.1 -32.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees

Residue
i		 Residue
i+1		 Distance of hinge axis to residue i in conformer 1
(A) 		Distance of hinge axis to residue i in conformer 2
(A) 		Change in psi (i)
(deg) 		Change in phi (i+1)
(deg) 		Angle of psi(i) axis to hinge axis conformer 1
(deg) 		Angle of psi(i) axis to hinge axis conformer 2
(deg) 		Percentage Progress
 LEU-215   ASP-216  9.7 9.9 0.9 -6.6 138.7 141.8 7.5
 ASP-216   CYS-217  6.7 6.7 -6.2 -4.3 107.1 108.2 36.9
 CYS-217   LYS-218  2.9 2.9 11.9 -22.6 86.9 103.5 55.7
 LYS-218   GLY-219  3.0 2.7 12.6 4.2 63.7 50.0 36.3
 GLY-219   TYR-220  4.4 4.7 11.1 -2.7 66.2 67.6 46.5
 LEU-215   ASP-216  5.6 5.7 0.9 -6.6 161.1 167.5 28.1
 ASP-216   CYS-217  3.7 3.7 -6.2 -4.3 80.5 82.5 188.7
 CYS-217   LYS-218  0.5 0.9 11.9 -22.6 103.9 120.0 109.7
 LYS-218   GLY-219  3.3 2.8 12.6 4.2 88.9 77.6 -48.1
 LEU-215   ASP-216  9.7 9.9 0.9 -6.6 138.7 141.8 7.5
 ASP-216   CYS-217  6.7 6.7 -6.2 -4.3 107.1 108.2 36.9
 CYS-217   LYS-218  2.9 2.9 11.9 -22.6 86.9 103.5 55.7
 LYS-218   GLY-219  3.0 2.7 12.6 4.2 63.7 50.0 36.3
 GLY-219   TYR-220  4.4 4.7 11.1 -2.7 66.2 67.6 46.5
 ASN-214   LEU-215  4.2 4.2 -2.0 7.9 55.5 58.8 -8.9
 LEU-215   ASP-216  5.6 5.7 0.9 -6.6 161.1 167.5 28.1
 ASP-216   CYS-217  3.7 3.7 -6.2 -4.3 80.5 82.5 188.7
 CYS-217   LYS-218  0.5 0.9 11.9 -22.6 103.9 120.0 109.7
 LYS-218   GLY-219  3.3 2.8 12.6 4.2 88.9 77.6 -48.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees