Diphtheria Toxin Repressor

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 THR-24   PRO-25  11.9 11.6 0.5 0.6 137.4 138.5 -61.1
 PRO-25   LEU-26  8.5 8.4 26.1 -23.5 128.7 118.9 3.2
 LEU-26   ARG-27  9.4 9.2 -10.9 8.6 30.8 28.1 22.9
 ARG-27   ALA-28  7.5 7.1 4.0 -3.4 135.7 136.1 51.4
 ALA-28   ARG-29  10.4 10.2 1.2 -9.7 77.5 82.5 -36.3
 ARG-29   ILE-30  11.4 11.2 13.0 -1.8 101.6 101.1 -51.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-39   THR-40  5.1 5.3 14.2 -14.1 106.0 101.5 -9.5
 THR-40   VAL-41  1.4 1.6 -4.7 -1.9 5.8 9.4 126.2
 VAL-41   SER-42  2.2 2.3 4.8 2.2 116.7 117.0 -78.6
 SER-42   GLN-43  4.4 4.3 -6.2 10.3 93.7 93.2 2.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-52   LEU-53  8.2 8.2 1.6 7.5 73.8 74.4 34.6
 LEU-53   VAL-54  5.3 5.4 -8.7 -0.1 90.6 96.5 54.2
 VAL-54   VAL-55  2.7 2.6 3.9 -4.1 90.1 93.3 40.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-63   MET-64  3.3 3.3 4.5 -1.0 87.7 86.7 -11.5
 MET-64   THR-65  0.7 0.7 -10.1 10.9 35.8 39.9 -19.5
 THR-65   PRO-66  3.1 3.1 -3.5 -2.7 63.0 60.0 60.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees