Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-533   MET-534  10.9 11.0 -3.6 8.1 111.9 109.5 26.4
 MET-534   THR-535  7.2 7.4 -0.3 -1.4 37.4 28.7 15.1
 THR-535   LEU-536  5.0 5.9 -10.7 -1.8 109.6 109.1 -2.4
 LEU-536   GLY-537  1.4 2.9 20.9 -20.6 145.5 141.6 2.4
 GLY-537   ILE-538  2.3 2.7 35.1 -33.1 74.2 68.0 7.3
 ILE-538   SER-539  5.5 5.4 14.3 -6.4 72.8 72.4 29.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-756   GLY-757  13.5 13.7 -9.3 8.8 84.9 93.0 10.2
 GLY-757   LEU-758  10.6 11.1 7.4 -18.2 66.7 73.7 -22.3
 LEU-758   ILE-759  7.2 7.7 3.9 -15.9 18.6 16.4 2.8
 ILE-759   ASP-760  7.4 6.7 158.0 -150.8 57.5 82.8 -67.7
 ASP-760   SER-761  3.8 3.3 -129.2 95.8 52.1 57.1 83.2
 SER-761   LYS-762  2.5 3.2 20.3 -21.2 78.5 81.6 38.9
 LYS-762   GLY-763  2.7 2.9 -7.0 -2.9 40.6 36.9 33.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees