Protein (Reverse Transcriptase)
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
GLN-85
ASP-86
16.0
15.5
6.4
-10.4
71.3
68.6
11.8
ASP-86
PHE-87
12.3
11.8
-8.8
2.6
139.2
134.0
-9.6
PHE-87
TRP-88
10.3
10.3
-19.3
70.4
80.8
89.5
29.6
TRP-88
GLU-89
6.6
7.0
13.7
21.5
26.4
64.7
115.2
GLU-89
VAL-90
5.9
4.8
-7.6
25.3
118.1
165.3
48.3
VAL-90
GLN-91
3.7
5.2
128.2
111.6
59.9
82.4
-136.7
GLN-91
LEU-92
4.5
2.3
-18.4
37.4
49.4
52.7
-61.8
LEU-92
GLY-93
4.4
3.5
-79.8
104.1
102.4
114.6
61.0
GLY-93
ILE-94
7.8
6.1
-17.5
-15.2
159.0
174.1
-144.1
ILE-94
PRO-95
10.1
7.6
14.5
11.7
58.7
76.2
65.6
PRO-95
HIS-96
9.8
9.3
-17.5
40.5
109.9
102.7
51.4
HIS-96
PRO-97
13.4
13.0
2.2
7.6
30.5
24.5
43.3
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
LYS-102
LYS-103
15.4
15.7
26.1
-16.3
127.0
133.5
2.5
LYS-103
LYS-104
12.5
13.0
3.8
-4.4
165.4
151.9
14.4
LYS-104
SER-105
12.3
13.4
-11.3
-0.5
69.8
80.5
12.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
VAL-179
ILE-180
6.0
7.0
17.5
-13.4
89.0
96.3
4.3
ILE-180
TYR-181
2.4
3.4
31.5
-39.1
152.6
165.0
29.0
TYR-181
GLN-182
4.0
2.9
26.5
5.3
95.6
91.5
-13.0
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ASP-186
LEU-187
8.3
7.2
54.7
-31.4
94.8
93.3
6.4
LEU-187
TYR-188
4.9
3.8
-14.6
9.6
49.2
57.9
48.3
TYR-188
VAL-189
5.6
4.4
6.9
-15.0
104.4
113.3
22.9
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
TRP-212
GLY-213
14.5
14.9
3.9
6.6
106.7
99.6
-6.5
GLY-213
LEU-214
16.0
15.6
11.5
8.5
90.2
99.9
-3.4
LEU-214
THR-215
13.0
12.2
13.4
-27.0
23.1
34.1
-48.8
THR-215
THR-216
13.5
12.1
-17.9
-1.4
91.4
80.3
29.0
THR-216
PRO-217
11.4
9.8
64.9
-2.8
141.1
146.7
-214.5
THR-216
PRO-217
11.4
9.8
64.9
-2.8
141.1
146.7
-214.5
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
THR-216
PRO-217
11.4
9.8
64.9
-2.8
141.1
146.7
-214.5
THR-216
PRO-217
11.4
9.8
64.9
-2.8
141.1
146.7
-214.5
PRO-217
ASP-218
14.0
10.5
-29.6
-3.5
58.9
47.5
82.4
ASP-218
LYS-219
13.7
8.8
98.6
131.7
69.0
103.0
-59.4
LYS-219
LYS-220
14.4
7.7
-91.0
36.9
127.5
84.9
504.9
LYS-220
HIS-221
10.9
11.4
-159.8
-25.5
57.0
144.5
-180.9
HIS-221
GLN-222
10.9
12.7
-60.7
-70.1
57.8
145.9
-36.0
GLN-222
LYS-223
8.7
10.7
-127.8
71.5
89.9
102.4
-141.6
LYS-223
GLU-224
9.7
12.5
98.3
-25.2
95.4
106.1
-240.5
GLU-224
PRO-225
13.4
12.8
39.5
-6.0
48.1
52.9
132.5
PRO-225
PRO-226
15.4
14.3
-165.4
8.8
150.3
79.8
-69.8
PRO-226
PHE-227
17.2
16.2
66.4
-23.7
61.1
58.0
65.0
PHE-227
LEU-228
14.1
14.2
-4.7
18.3
147.6
149.0
43.9
LEU-228
TRP-229
15.2
16.5
37.8
-17.6
48.8
49.0
15.6
TRP-229
MET-230
12.7
14.1
-2.9
-7.4
152.1
163.1
-20.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees