Glutamate Receptor Subunit 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-107   SER-108  2.7 2.8 -5.5 6.9 9.7 8.8 -7.0
 SER-108   LEU-109  2.7 2.9 5.2 -3.0 98.6 98.6 57.9
 LEU-109   GLY-110  2.0 2.1 -3.8 2.6 14.3 14.0 10.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-193   SER-194  7.3 7.2 -8.8 -0.5 54.9 58.5 243.5
 SER-194   THR-195  7.3 7.2 -6.5 -7.5 2.6 5.5 327.0
 THR-195   MET-196  6.0 6.0 18.2 -4.0 114.8 116.5 -312.5
 MET-196   ASN-197  9.2 8.8 2.1 0.6 82.5 82.4 -43.2
 ASN-197   GLU-198  11.4 11.3 0.8 3.0 50.2 47.3 59.6
 ASN-197   GLU-198  11.4 11.3 0.8 3.0 50.2 47.3 59.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-197   GLU-198  11.4 11.3 0.8 3.0 50.2 47.3 59.6
 ASN-197   GLU-198  11.4 11.3 0.8 3.0 50.2 47.3 59.6
 GLU-198   TYR-199  11.0 10.8 -3.5 3.6 159.5 157.4 -8.9
 TYR-199   ILE-200  10.7 10.5 -1.4 1.4 96.7 95.2 15.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-216   SER-217  2.6 2.8 4.7 -6.9 148.8 146.8 40.0
 SER-217   LYS-218  2.1 2.1 10.9 -9.8 102.6 101.7 6.2
 LYS-218   GLY-219  2.3 2.3 4.3 -4.4 172.4 171.7 19.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-250   LYS-251  2.3 2.3 -3.5 -1.0 51.5 54.9 16.8
 LYS-251   ASN-252  3.7 3.8 0.4 9.9 66.6 61.7 130.3
 ASN-252   LYS-253  7.0 7.0 -7.7 1.2 138.6 136.5 -127.8
 LYS-253   TRP-254  5.4 5.4 -3.1 4.2 74.9 73.8 7.1
 TRP-254   TRP-255  5.8 5.9 1.2 -0.4 132.8 130.6 29.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees